Gene detail

Detailed information of OS493_001610-T1 in Lophelia pertusa

Genomic Location: scaffold_3:5902763...6110771
NR annotation: KAJ7381472.1, Cleavage and polyadenylation specificity factor subunit 1 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_001610-T1

ATGTGGACAGTGTTGGCAGGTGACCAGGGTGACAGTAGCTATCACGCTTTCCTGTTACTGAGTAGAGAGGATTCTAGCATGGTGTTAAAGACAGAGCAAGAGATTATGGAGCTTGATCATTCAGGATTCACATCACAGTACCCTACAGTGTTTGCTGGAAATCTTGGCAATGGAAAATATATCTTACAGGTTACTCCTCAAGGTGTCCGACTATTAGAAGGAGTAACTCAGCTATATCACATTCCACTGGATGCTGGCCTGTCATCTATTGTATGGTGTTCACTGTCTGATCCTTATGCAGTGATGATGACAGCAGATGGCTCTCTTATTTTACTTGAGTTCACATTAGAAGGTGCAGAGCCAAAGGTGAAGATATCCAGACCACAGATCAACCAAGGTGCTAAGGTGTGTGCCTGTTGTGCGTACAGAGATGTTAGTGGCATCTTTTCAACAGAGAAGGTTGCACAGTCCAACAGTGAAGTACAGCTACAGGCCACCACTCCTACTACTCCAAAAATCAAGGACATTGTTGATGAGGATGAATTACTGTATGGGGAATCGTCTTTACCATTCACATCAGTTGAGGACACGCAAGAACAGCAAAAACCAAATGAGAGTATTCCTGTTAAGGAATCTAATGTTGAAGTGGTGAAGCCAACATGGTGGTGTGTGGCTTGTCGTGACAATGGTGTCATGGAGATTTACACTTTACCAGACTTCAAGTTAGTTTTCCTGGTAAAAAATTTCAATATGGCTCCAAGAGTGCTAGTGGATAGCGGATCAACATCTGCTGCAAGTAGTATGACAGGTGGTGTTGGTGTGGAGGATTCTCTACCTGTCAAGGAAGTGTTATTAACGGGACTGGGACACAACAACAACAGACCCATGCTCATTGCATTTGTTGAACAAGATCTTCTGGTTTATGAAGCATTCACATTCACTGAAGCATCTGTAGAGGGTCATCTTAATCTTAGATTTAGGAAGTTGCAGCACAATTTGCTCCTACGTGAAAAGAAATCAAAGCAGCTAAAAGTAAAGCAGAGTGATGCTACTCAAGGGACAAAACCCAAAGTTGCCAGTCTTCGTGTGTTCCATGACGTCTCTTCTTATTCAGGGGTGTTTGTATGTGGCTCATACCCTCATTGGCTGTTTGTCACCAGCAGAGGTGCACTGCGAGCTCATCCAATGAATATTGACGGTGCTGTCACCTGCTTTGCTCCTTTTCACAATGTCAACTGTCCTAAAGGATTTCTTTATTTCAACAAAAAGGGAGAGTTAAGAATTTCAGTTCTGCCGACACATCTTAGTTATGATGCTCCTTGGCCTGTGCGGAAGGTTCCACTCAGATGTACACCTCATTTTGTGACTTACAACAGAGAAAGCAAGACATATGCTGTTGTCACAAGCTTATCAGAACAAACTAAGATGGTGGTCAAGTTGAATACTGAAGATCATGAACCAGAAGACATTGATCGAGATGCAAGATTTGTATATCCAATCATTGACCGGTTCAGCTTACAGCTTATCTCACCAGTTAGTTGGGAGATTATACCAAGTACACGTATTGAAATGGAGGATTGGGAACATGTGACCACATGTAAGAACCTTATGCTTTCAAGTCAGGAGACACACACAGGTCACAAGGGCTTCATCTGTGTTGGCACAACTCATGTGTATGGTGAAGATATCACTTGCAGGGGACGGATTTTAATCTTTGATATCATTGAAGTTGTTCCTGAGCCAGGCCAGCCTCTGACCAAGAATAAGTTTAAAATGCTGTATGGTAAGGAACAGAAAGGCCCTGTCAGTGCTCTTACTCAAGTCAATGGTTACCTTGTGAGCGCCATAGGACAGAAGATTTACATTTGGAACTTCAAAGATAACAATGATTTGGTGGGAATGGCATTTATTGACACACAAATGTACATTCACTCATTGATGTCCATCAAGAATCTGATTATCGCAGCTGATTTGTCCAAGAGCATTACACTACTACGCTTACAGGAGGAGACAAAAACTTTGGCATTTGTAAGCAAGGATCCCAAATCATTAGAGGTGTATGGAGCTGATTTTGTTATTGATGGTCCTCAGCTGGGATTTCTTGTGTCAGATGTGGACCAGAACTTATTACTCCTAACTTATCAACCAGAAGCTCTTGAAAGTTTTGGTGGTCAGCGGCTACTTCAGCGAGCAGATATAAACGTAGGAAGCAACATTACGTCATTCTTCAGGATTCGTGCGAGAACAACTGGGAAAGTAGGCGGCAAAGACTTGAGACAACTGACTTGCTTTGGCACACTGGATGGAGGGCTGGGACTTTTGTTACCTATGACAGAAAAGACATACAGGCGACTTCATATGCTGCAGACCAAACTCGTTGAATGCATTCCACACATAGCAGGTCTCAATCCAAAGGCTTTCAGACTTATCAGTGGAAAGAAACGTGCCCTTAACAATCCTCATAGGAACATACTGGATGGAGAATTACTTAACAAGTTTTCTCAGCTTGGTACAATGGAAAGACTTGAGGTTACAAAGAAGATTGGCACCACACCGGCACAGATTCTTGATGACTTGATGGATGTTGAAAGAGCATGTACACATTTCTGA

Transcript

OS493_001610-T1

Protein

Uniprot

Uniprot term	Description
A0A0R4IC37	Cleavage and polyadenylation specificity factor subunit 1 OS=Danio rerio OX=7955 GN=cpsf1 PE=3 SV=2
Q9EPU4	Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus OX=10090 GN=Cpsf1 PE=1 SV=1
Q10569	Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus OX=9913 GN=CPSF1 PE=1 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DDB1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10433	MMS1_N	Mono-functional DNA-alkylating methyl methanesulfonate N-term	Repeat	Interproscan
PF03178	CPSF_A	CPSF A subunit region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050358	Family	RSE1/DDB1/CFT1/CPSF1	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR018846	Domain	Cleavage/polyadenylation specificity factor, A subunit, N-terminal	Interproscan
IPR004871	Domain	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10644	DNA REPAIR/RNA PROCESSING CPSF FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005847	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14401	CPSF1, CFT1; cleavage and polyadenylation specificity factor subunit 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Expression pattern

Expression trend for OS493_001610-T1 global co-expression network