Detailed information of OS493_001422-T1 in Lophelia pertusa

Genomic Location: scaffold_3:1132375...1133418
NR annotation: KAJ7381301.1, rhombomere 2 development [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q14549Homeobox protein GBX-1 OS=Homo sapiens OX=9606 GN=GBX1 PE=1 SV=2
P82976Homeobox protein GBX-1 OS=Mus musculus OX=10090 GN=Gbx1 PE=2 SV=2
Q91907Homeobox protein GBX-2 OS=Xenopus laevis OX=8355 GN=gbx2 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR020479DomainHomeobox domain, metazoaInterproscan
IPR042982FamilyHomeobox protein GBX-1/2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24334HOMEOBOX PROTEIN GBXInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0051960Biological Processregulation of nervous system developmentInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09321GBX; homeobox protein GBX-Transcription factorsko03000deepkoala

Expression pattern
 Expression trend for OS493_001422-T1 global co-expression network
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