Detailed information of OS493_001359-T1 in Lophelia pertusa

Genomic Location: scaffold_3:244792...262444
NR annotation: KAJ7381243.1, Cullin-1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q13616Cullin-1 OS=Homo sapiens OX=9606 GN=CUL1 PE=1 SV=2
Q9WTX6Cullin-1 OS=Mus musculus OX=10090 GN=Cul1 PE=1 SV=1
Q5R4G6Cullin-1 OS=Pongo abelii OX=9601 GN=CUL1 PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 adaptor Cullin RING|Cullin

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10557Cullin_Nedd8Cullin protein neddylation domainDomainInterproscan
PF00888CullinCullin familyRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045093FamilyCullinInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR016158DomainCullin homology domainInterproscan
IPR019559DomainCullin protein, neddylation domainInterproscan
IPR036317Homologous_superfamilyCullin homology domain superfamilyInterproscan
IPR016159Homologous_superfamilyCullin repeat-like-containing domain superfamilyInterproscan
IPR016157Conserved_siteCullin, conserved siteInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR001373DomainCullin, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11932CULLINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0019005Cellular ComponentSCF ubiquitin ligase complexInterproscan
GO:0030674Molecular Functionprotein-macromolecule adaptor activityInterproscan
GO:0031146Biological ProcessSCF-dependent proteasomal ubiquitin-dependent protein catabolic processInterproscan
GO:0031461Cellular Componentcullin-RING ubiquitin ligase complexInterproscan
GO:0031625Molecular Functionubiquitin protein ligase bindingInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03347CUL1, CDC53; cullin 1-Ubiquitin systemko04121deepkoala

Expression pattern
 Expression trend for OS493_001359-T1 global co-expression network
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