Detailed information of OS493_001285-T1 in Lophelia pertusa

Genomic Location: scaffold_2:7665648...7693923
NR annotation: KAJ7387933.1, Transcription elongation factor SPT4 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P63271Transcription elongation factor SPT4-A OS=Mus musculus OX=10090 GN=Supt4h1a PE=2 SV=1
Q3SYX6Transcription elongation factor SPT4 OS=Bos taurus OX=9913 GN=SUPT4H1 PE=3 SV=1
P63272Transcription elongation factor SPT4 OS=Homo sapiens OX=9606 GN=SUPT4H1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06093Spt4Spt4/RpoE2 zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029040Homologous_superfamilyRNA polymerase subunit RPABC4/transcription elongation factor Spt4Interproscan
IPR038510Homologous_superfamilySpt4 superfamilyInterproscan
IPR022800DomainSpt4/RpoE2 zinc fingerInterproscan
IPR009287FamilyTranscription initiation Spt4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12882SUPPRESSOR OF TY 4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0140673Biological Processtranscription elongation-coupled chromatin remodelingInterproscan
GO:0000993Molecular FunctionRNA polymerase II complex bindingInterproscan
GO:0006325Biological Processchromatin organizationInterproscan
GO:0032044Cellular ComponentDSIF complexInterproscan
GO:0034243Biological Processregulation of transcription elongation by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15171SUPT4H1, SPT4; transcription elongation factor SPT4-Messenger RNA biogenesisko03019deepkoala

Expression pattern
 Expression trend for OS493_001285-T1 global co-expression network
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