Detailed information of OS493_001266-T1 in Lophelia pertusa

Genomic Location: scaffold_2:7239850...7256426
NR annotation: KAJ7387914.1, Smg-6, nonsense mediated mRNA decay factor [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5RAK6Telomerase-binding protein EST1A OS=Pongo abelii OX=9601 GN=SMG6 PE=2 SV=1
Q86US8Telomerase-binding protein EST1A OS=Homo sapiens OX=9606 GN=SMG6 PE=1 SV=2
P61406Telomerase-binding protein EST1A OS=Mus musculus OX=10090 GN=Smg6 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10373EST1_DNA_bindEst1 DNA/RNA binding domainRepeatInterproscan
PF10374EST1Telomerase activating protein Est1RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018834DomainDNA/RNA-binding domain, Est1-typeInterproscan
IPR045153FamilyEst1/Ebs1-likeInterproscan
IPR019458DomainTelomerase activating protein Est1-like, N-terminalInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15696SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0005697Cellular Componenttelomerase holoenzyme complexInterproscan
GO:0042162Molecular Functiontelomeric DNA bindingInterproscan
GO:0070034Molecular Functiontelomerase RNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

Expression pattern
 Expression trend for OS493_001266-T1 global co-expression network
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