Gene detail

Detailed information of OS493_001106-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_001106-T1	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	scaffold_2	4665958	4688307	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_001106-T1

ATGGGCATTGATCCAGCAGTTGGAAGATATGAAGAAAACCTCGACAAGGCAGAGACAAGCGGGCAGCAAGCTGTTGACGCCATTACTGCTTTGGACGGTGATCCTTCGCTCGTCCAAGACGAACTCGCAGCCGTTAGACAGAAGTACGACACTCTTCTGGATCAGTTGAAAGACAAACAAACGCAGTTGGAACAGGCCATTGAACAAGGAACACAGTTACAAGATAAACTGGATGAAATTCAAGCTTGGACCGCTGATAGTGTTGAGACCGTGGAAGACTGGGAGCCAATAAGTACGGACCCTGTTACAGCGAATAAACAACTAGAGCAGTTACAGGCGGTTAAGGATGATCTCGAAAAGCATCAAGCAAGTCTAAAGGACAGCAAGTCACTAGCGGAGGAACTGCTTTCCTCCACTGAACTTCAAAGCCGTCTATCCAGAGCTGAACTCGAGTTGAAACAACTGTCAGAGAAGATTGATGAACGAGAGAACCAGCTCCAAGCAGCGCTTGCGCAGTGTGGTCAGTTTGAGACTGATTTTGATGAGTTCTTACGCTGGCTTACCAAGACAGAACGAACTGTGGCCAAACTGAGGCCTATTTCAGCTGACTTAGCAACAGTTCAAGAACAGAAAGACAGTTACCAGGACATTCATCAGGAGATTCAAGACAAAGAACCAACTTATGCTGCCCTGTTGGCTGCTGGTGAACAGCTGAAGGAAACAAGCCAGCTGCCCGCTGACCGAGATAACCTACAGGAAAAACTCGACAACATGAGCCAGCGATGGACTGAGCTGAACACTGCATCAGATGACCGAGCCGCTAAGTTGGAACAAGCAGTAAAACTGACTAGTGAGTACCAGGAGCAGCGCGGCCACTTTGTACCGTGGATGGAGGAAGCAGAAAGGAGAGTGGACGCTATTCGGTTGGCCTGTGATCCTGAAACTCTTGAATCTCAAAAGCAACGTGTGGAGGAATTACAGCAAGATGTAGAGAATCATTCAGATGCACACGACGAACTTGACAACACAGCACAGGAAATCACTCAAGTTTGCGTTGAAGAAGTGAGCTCTGTCGAGGATGACATTCAAAATGTGGACAAACGGTGGAATGACTTGAACAAGAACCTTCAGACTACACTGGCAGACATTGAAACCTTACAAGGTCAGCTGCAGGAATACAGAGAAGCTGTTGACAGTGTTGATGAGAAAATATCTGCGGTTGAAACTGAAGTGAACGTGGAAAGAATTCCTGTGTCTGATGTTGAAGAGATGAAGAAGCACATCCAGCAGCTTGAGGCTCTAAAGGAACGGTTAGAAGAGCTTAAACCAGGCGTTAAATCTGCTATAGAGGCAGGCGACAGTATACAGGAAGGTAACCCGAGCGCTGACACGGCTGCTGTTGAAGCAGAGAACAAGAAGGTACAGGATCATTACGATGCAGTGCAAGACAAGCTTACTGACGAGATTGACAAGAACAAAAAGATGGCCGCAGACCTGGAGGAGTACTGGGAACAAGAAGGCAAACTAGAAGAGCAGTTTAAGGAGACTGGGATCAATTTGGAAGAAAATAAACCCACAGTGATGGATGCTGGGAAACTTAAAGAACAACTGGAGAAAGCAAAGCTACTGAAGGCAGGGATAGAAGATCTCAAGCCTGATTTTGACACAGCTAACAAACAAGCCCAGGCCCTCATCACCACTGGCCTGGGATTTGATTCTGCGATTGTGAAACAAATGTCCGTTACTGACAAACAATGGAATGACGTCAACGACGCCGCAGCCAATCAGCAAGCGGAGATCGAGAAGGCACTGCAACAAGTGGAAGAGATGCAGGAAGCATTGCAACAAGCAGACAAGGCCATGTCTGAAACTGAAGAGAAAGTCAAGCAGCTCCCGCCAGTCGGTACAGATGTGGACACAATTAACCAACAGCTGGAGGATATCAAGGATTTACAAAAGGAAATTGACGGGATCCAGGAGCAGATTTCATCACTAAATGATCTGAAACACAAGATGGCCGTGGCGTACCCAGATGCTGACACCAGTGATATTGACCAGGCCATAAGCGAACTAAACCAGAGACTTCTGGCTGTGAGTCAAGATCTTGGCAACAGGCAGACCAAGCTAGAAAACGCGCTGCTGGCCTGTGGCAAGTTCCAGGATGCTCTGCAGTCGCTGCTTGACTGGCTGGCAGAGACGCGTGAGCTGGTAGAGAATCAAGGCCCCATTGCAGCAACTGACCCTAACGTAATGAAGGCTCAAATGCAAGAACAGAAGCTGTTTACTCGGATGATCGCCGATCGAGCGCCTGCAGTAAAGTCCTTACAGGAAACTGGTGAAGAAGTTCTGAAGAGCGCTGATGAAGACACCAAGGCACGTATCCAAGAAGGACTGGAAAATGTCTCACGCCAGTGGGAGGAGCTTAATGACATGACAGACACCAGGAAAAAGTCGCTGGACGTTACCATGGAAGCATCTGTCAGGTTTGATGGACTGCTTGCTGACGCCAATAAGAAGTTAGCCGCTGTGGAGGAGAAACTGCAGGCTCAACAACTGGGTCAGAAAGCAGAACCTGAATATATCCAGGAAGAAGCGAAAAAGCTACAGGAGTTATGCCAAGAAATTGACAGCCTTGAGGCGCCTGTTCAAGAAGCAACCCAAGCGGGCGAGCAACTCATGTCACACTGCACCGATGAAGATAAAAACTTGGTGCGTGACAAAACAGACAAGCTGCTGCAGCGTTACAACAAGTTGCGTGACCAAGCTAATGACAAGAGAAAGGAAGCTGAAGACGCTGCAAAGCTTTCGGAAGATTTCTTTGACGCCAAAGATCAGTTGATTGCTTGGTGTGACGAGACTGCGAGTAAACTGGAAGCGGTAAAAGAGGAAAGTGAAAATGTTCAACAGGAGAGACTTAAGGATATCCAACAAGCTTTAGCAGCTAAAGCACCAGAGGTATCCTCATGCAAAGAGATGGGTGGTAACCTCAAGAAATATCTCATTGAAGACGAAAAGCCGAAAGTGGAGCAAGCCCTGAACGAGGTGGATGAAAAATGGAGTTCTTTGCAAGCAGAGGTGGACAAGCTCGCCAAGAAATTGTTCTCATCTCAAGAACGCGTTGACAGCTTCCAGCTTGAAGTGAACGAGCTAAAGATATGGCTAACGGAGACAGAAGGCACATTAGCCAGTATGGAACCCGTGGGGGTGGAGCCTGAGAAGGTTAAACAACAGCTTGGGGCACAGGCGGCTCTAAACGCAGATGTGGCATCGCATGAGAAACCTGTGAAATCCGTGTGCGAGAACGGCGAGGCCCTGATACCAGTGTTACATGACGATGAACAACAGACCGTGAAAGAAGATATTGACAACATCAAGACACGATACCAGAATGTGAAGAGTGAAACATCAGCTCGCCAGGCGTCACTAGTGGAAGCTCTGTTACTCTCACAGCAGTTCAGAGATATTCACAAGGAGGTGATCACTTGGCTTGACCGCTGTGAAGAAAACTTCCGAAAGCTTGACGATGAATCGGTTGCGGAGCTTCAGCAGGAGAGAATCAAGTCAATCCAGGAAGGCATCACTGCCCTTAAAGTTTTGATCGGTAATCTGGAAGAAACCGGAAACGATCTTGTCAAGCTGAGTGGCCCGAGCGAGGGATCCACTTCGGTTGAAGAGAAGGCAGACAGAGGAGCGAGGAATCAAGATTGGCATGACGCTAGCACAGGAAGAAGAATTACAGAACAGACTGGAAGAACTGCAGGCTCTGTTGGAGAGAAGAAAGATGAGTTTGGCAATCTGAAGCCCATCAGCGTCAAACCGGAGAAAATTCGTCATCAGATTGAAGAGCTGAAGGGACTTCAAAGTGAATTCGATCCTGAAAAGGAGTTAGTTGAAGAAGTCAGGCCGTTGGTGACAGCTGTTGTGAATGCCAATCCAGATTCCAAAACATCGCTACTCATGAAAGACAAGATGAACAAAGTATCCTCGCTCGCAGCAGACACACAGACCTTGTATGACGACAGGCTCAAAGCTCTTGAACTGTCCCTAGATGCTGGGGACAAGTTTTGGACGGGCTTAGATGAGATCAAGCACATTCTGAAGGATGTGCAGGATCATCTTGACTCGGAAGAGCCCCCTGCCGCTGACATGGATGTACTGGAGGAGCAGATTCATGATCACCAGGAGCTTCGTACAGAGCTGGATGCACACAGCGAAGCAGTAAATGTGTTATGCGAGGCTAGCCCTGTTCTGGTAGCACACTGCAGTTCTAGTGACAAGCAACTGGTACAAACAGAGCTCGCTCAAATCAGTAAACAGTGGGCAGATATCGAGAAGACATGGAACAAGCGAGAGGCTGAAATGGAAGATGTGAAGAAGACGGCTACTCAGTACCACAACACCCATGATCCTCTGCTGGCTAAGTTGACTGACTTGGAACAGAGGCTGGCCGAGCAGCCGCCTGTGGGGACTGAACTGGACATTGTCAAAGAACAGCTGAAAGAGCAGAAGGCCTTCCAAAAAGAGCTGACTCCAATCCAACGCGATATAACGGCTGTTAACCAGAAGGGTACAATGCTGAGCGAGCAGTGTCGCCCTGAAGACTCAGAGCTGATTACAGCGCAACTGGAGGACATGAACACTCGCTGGGATGACTTGTGCATTCATTCAAGCGAGAGACAGCAGACCATCGAGGGAGCGCTGTTACAGCTGGGGCAGTTCCAACTGGCCTTGGAAGAGCTGCTTGTTTGGGTTAAACAGACCAACGCCACCCTGGATGAACAACTGGCTACGAATGTCCAGGGAGATGTCAAGTTTATTGAAGTGGAGAAAGCCAAACACAAGATTCTTCACAATGACATCCTCGCACACGAACCTTCCGTGGAATCCGTGTCACGTGCCGCTTCCTCGCTGTTGATGGAGAACGGAGACAGTAAGCTGGATAGCGGCGCCCTGCAGATGAAGGTGACGGAGCTACAGGAAGGATGGCAGGAGGTGCTGGACAAGGCAGCCCGCCTGGATGCCGAGCTCACAGCTGCGCTGAGGGCGTCACATGACGTCATGGACCAGATGAAGGAACTCAGGACTTGGCTGAATGAAGCTCGTGAATTTCTTTACTCCAGGAGACAAATCGGAGGCCGACCTGAGAGTGCGCGCAATCAACTCGCCAAACACAAGGACTTCTTAGACGTGCTAGTAAAACGCAAGGAAACCTACGAACGAATCACTGAAGCCGTACAAGCCATGATAGGCAACAGCGACCCAACCACGGCAGCCTCGCTTCAGAGACATCTGGACGAAGTGAAGGAAGCCTGGGAACAAGTGAATACCAAGGCAGAGGAAGAAGGTAGTAAGCTGGATGACGCGCTGAAGAATGCGGAGGAACTAAAGCGACAAATAACAGACATGGACTCGTGGCTCGCACAGGTTCATGAACAAATAGTGTCCCTCGATAATGTCAGCTCCATTCTGGATGTTTTGGAAAAACAACGGCAGGAATATAAGGTTCTCAAAGACGACATCGATGCTCACCGTGAACCATTCAAACAGCTCAAGATTCTGGCGTACAAGATCACTGATGTATGTCTACAGGAAGATGTGGCTTACATTGACGTAACTGTCATAGAACTGGAGGCTCGCTGGAAGGAGCTGCTTGGCCTGTCTTCTGGCCGAAAGAAAGATCTCGACGAGAATTACAGGCTGTCGCAGAAGTTCTTCAAGGGCGCTGTTGATCTCATGAAGATGTTGGATGAAGCGGAGCAGAGCCTTAAGGACGAGGAACCGATCGGGGTGGATCCTTCTCATCTGAGAGCGCAACTCAAGAAACACAAGGAGTTCCAGTCCATGCTTGGCGCTAATCAAACATCAATGGATGGCACTATTAAGACAGGCAAAGTATTGATGGACAAGAGTCCAGATGATGACTCCATCATGATTGAAGGGAAGATAGCTGACCTCAAGGCACGATGGGATGCCATCTGTGCGCTGTCAGTGGAAAGGCAACAAAAGCTCGAGGAAGCGCTTCTCTACACTGGCATGTTCCAGGATGCTTTGCAGTCTCTGCTTGACTGGCTCAGTACAGTGGAACCCAGTCTCTCCACTGAGACCGCTGTCATGGGTGATCCTGAAACTGTACAAATCTTGATCGACAATCACAAGACGTTTCAGCGTGAACTTGGCCGCCGCCAAGCAAACTATGACTCTGTGATGAATGCAGGCAGGACAATGGTCGATGAAAACAAAGTTGAGGAACCACAGAAACTGGAAGAGAGGCTTGACGACTTGCGCATGCGCTGGGAAGCTATCAGCGCCTTGGCTTCCACTAAACAAGACAGGCTAGAGAATGCTCTGATTTTGGCGAATGAGTTTGACTCTTCTGTTAAGACCGAGTTACGCATACTGAAGGACTTTGAAGATACGCTCAGGGGACTGGGTCCTATTTCCGACGACCTGGAAACTATTGCCGAGCAGCTGAATGAACACAAGACGTTCCACGAAGACTTGATGGCAGAGGAAGTGAATTTCCAATCAACAATCAAGAAGGGACAAGTGATAGCACGCTTCTGTCATCCCAGCGCGCTACAGATCATACAACAGTGGATTGCAAGACTCAAGAAACGCTGGGAGGAGGTGCGTAAGTGGTCAGTTCAACGACTGACGCGCCTGGAGGAAGAACAAGCCAAAATGACAGAAGAACAGAGTATGATGGAGGAACTGATGCAGTGGATCGGGAAAAAGGAAGAAATCCTCATCGAAAAGGAGAACGAACCGATACCAGACGACGATTACGAACAAGTCATGAGGCTGTTAGAAGACCACAAAGGTTTCCAAGAAGAAATGGCCAAGAAACAACCGACTTATGACAGACTCACCAAATCAGTCAAACGACGCGGCTCTGCGGTGCCTGCTGCTGCTTCCCCGGTACAAGCGCAGATCACTCCAGAGCACAAGCAAGGCCGGCGTGGGAGTAGTAGGATTCCTAAACTCGCCAGCCCTGCCACGTCTTTCACGCGGGAACGATCACGTGACAAGTTGACGCTCATCACCAGCCCAGGCTCCTCGTTCACGCGGTCAGGTTCCGCTACACTTGATAAGAACCATCCAGCTTTGCTGCACTTATCCAAACGATGGCAACATCTGTGGCTCCTTTCGATGGAAAGACTGCGACGTCTGCAGGAGAAACTGGAGCGGATTGCTATTAGACGCGCCTCAGCGAAGTTTGACTTCAACGAGTGGAAGAATAGGTTTAACAAGTGGCTGCGTGACAGCAAGTCACGCGTTCTCGACATCTTCCGCCGCATGGATCACGATCGAGATGGTTTCCCAACAGAAAGATGGGAGATGGAAATAGTCGCCAGCAAATTTGAACGTGATGGACTCATTGACTACAAGGAGTTTGTGAACTCACTAAAAGATAAAAAACCGTCGACCAAGAAGCCGGAGAAACCCAAGACTGATGAGCAGCAGATTCAGTCTGAAGTTGAGCGGCAGTGCCGCAAGTGCGCCTGTTGTAGTCAATACGCTTTCGTCAAAGTGGCTGAGAACAAATACAGAGTAAGTTAA

Transcript

OS493_001106-T1

Protein

OS493_001106-T1

MGIDPAVGRYEENLDKAETSGQQAVDAITALDGDPSLVQDELAAVRQKYDTLLDQLKDKQTQLEQAIEQGTQLQDKLDEIQAWTADSVETVEDWEPISTDPVTANKQLEQLQAVKDDLEKHQASLKDSKSLAEELLSSTELQSRLSRAELELKQLSEKIDERENQLQAALAQCGQFETDFDEFLRWLTKTERTVAKLRPISADLATVQEQKDSYQDIHQEIQDKEPTYAALLAAGEQLKETSQLPADRDNLQEKLDNMSQRWTELNTASDDRAAKLEQAVKLTSEYQEQRGHFVPWMEEAERRVDAIRLACDPETLESQKQRVEELQQDVENHSDAHDELDNTAQEITQVCVEEVSSVEDDIQNVDKRWNDLNKNLQTTLADIETLQGQLQEYREAVDSVDEKISAVETEVNVERIPVSDVEEMKKHIQQLEALKERLEELKPGVKSAIEAGDSIQEGNPSADTAAVEAENKKVQDHYDAVQDKLTDEIDKNKKMAADLEEYWEQEGKLEEQFKETGINLEENKPTVMDAGKLKEQLEKAKLLKAGIEDLKPDFDTANKQAQALITTGLGFDSAIVKQMSVTDKQWNDVNDAAANQQAEIEKALQQVEEMQEALQQADKAMSETEEKVKQLPPVGTDVDTINQQLEDIKDLQKEIDGIQEQISSLNDLKHKMAVAYPDADTSDIDQAISELNQRLLAVSQDLGNRQTKLENALLACGKFQDALQSLLDWLAETRELVENQGPIAATDPNVMKAQMQEQKLFTRMIADRAPAVKSLQETGEEVLKSADEDTKARIQEGLENVSRQWEELNDMTDTRKKSLDVTMEASVRFDGLLADANKKLAAVEEKLQAQQLGQKAEPEYIQEEAKKLQELCQEIDSLEAPVQEATQAGEQLMSHCTDEDKNLVRDKTDKLLQRYNKLRDQANDKRKEAEDAAKLSEDFFDAKDQLIAWCDETASKLEAVKEESENVQQERLKDIQQALAAKAPEVSSCKEMGGNLKKYLIEDEKPKVEQALNEVDEKWSSLQAEVDKLAKKLFSSQERVDSFQLEVNELKIWLTETEGTLASMEPVGVEPEKVKQQLGAQAALNADVASHEKPVKSVCENGEALIPVLHDDEQQTVKEDIDNIKTRYQNVKSETSARQASLVEALLLSQQFRDIHKEVITWLDRCEENFRKLDDESVAELQQERIKSIQEGITALKVLIGNLEETGNDLVKLSGPSEGSTSVEEKADRGARNQDWHDASTGRRITEQTGRTAGSVGEKKDEFGNLKPISVKPEKIRHQIEELKGLQSEFDPEKELVEEVRPLVTAVVNANPDSKTSLLMKDKMNKVSSLAADTQTLYDDRLKALELSLDAGDKFWTGLDEIKHILKDVQDHLDSEEPPAADMDVLEEQIHDHQELRTELDAHSEAVNVLCEASPVLVAHCSSSDKQLVQTELAQISKQWADIEKTWNKREAEMEDVKKTATQYHNTHDPLLAKLTDLEQRLAEQPPVGTELDIVKEQLKEQKAFQKELTPIQRDITAVNQKGTMLSEQCRPEDSELITAQLEDMNTRWDDLCIHSSERQQTIEGALLQLGQFQLALEELLVWVKQTNATLDEQLATNVQGDVKFIEVEKAKHKILHNDILAHEPSVESVSRAASSLLMENGDSKLDSGALQMKVTELQEGWQEVLDKAARLDAELTAALRASHDVMDQMKELRTWLNEAREFLYSRRQIGGRPESARNQLAKHKDFLDVLVKRKETYERITEAVQAMIGNSDPTTAASLQRHLDEVKEAWEQVNTKAEEEGSKLDDALKNAEELKRQITDMDSWLAQVHEQIVSLDNVSSILDVLEKQRQEYKVLKDDIDAHREPFKQLKILAYKITDVCLQEDVAYIDVTVIELEARWKELLGLSSGRKKDLDENYRLSQKFFKGAVDLMKMLDEAEQSLKDEEPIGVDPSHLRAQLKKHKEFQSMLGANQTSMDGTIKTGKVLMDKSPDDDSIMIEGKIADLKARWDAICALSVERQQKLEEALLYTGMFQDALQSLLDWLSTVEPSLSTETAVMGDPETVQILIDNHKTFQRELGRRQANYDSVMNAGRTMVDENKVEEPQKLEERLDDLRMRWEAISALASTKQDRLENALILANEFDSSVKTELRILKDFEDTLRGLGPISDDLETIAEQLNEHKTFHEDLMAEEVNFQSTIKKGQVIARFCHPSALQIIQQWIARLKKRWEEVRKWSVQRLTRLEEEQAKMTEEQSMMEELMQWIGKKEEILIEKENEPIPDDDYEQVMRLLEDHKGFQEEMAKKQPTYDRLTKSVKRRGSAVPAAASPVQAQITPEHKQGRRGSSRIPKLASPATSFTRERSRDKLTLITSPGSSFTRSGSATLDKNHPALLHLSKRWQHLWLLSMERLRRLQEKLERIAIRRASAKFDFNEWKNRFNKWLRDSKSRVLDIFRRMDHDRDGFPTERWEMEIVASKFERDGLIDYKEFVNSLKDKKPSTKKPEKPKTDEQQIQSEVERQCRKCACCSQYAFVKVAENKYRVS

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00435	Spectrin	Spectrin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002017	Repeat	Spectrin repeat	Interproscan
IPR003108	Domain	GAR domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018159	Repeat	Spectrin/alpha-actinin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003786	Molecular Function	actin lateral binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005826	Cellular Component	actomyosin contractile ring	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054	Cellular Component	cell junction	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0032432	Cellular Component	actin filament bundle	Interproscan
GO:0042995	Cellular Component	cell projection	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0051017	Biological Process	actin filament bundle assembly	Interproscan
GO:1903478	Biological Process	obsolete actin filament bundle convergence involved in mitotic contractile ring assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_001106-T1 global RNA-seq network