Detailed information of OS493_000673-T1 in Lophelia pertusa

Genomic Location: scaffold_1:9386838...9389000
NR annotation: KAJ7394838.1, hypothetical protein OS493_000673 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P17863Transforming protein Ski OS=Avian erythroblastosis virus (strain Sloan-Kettering) OX=11862 GN=V-SKI PE=1 SV=1
P49140Ski oncogene OS=Gallus gallus OX=9031 GN=SKI PE=1 SV=1
P12755Ski oncogene OS=Homo sapiens OX=9606 GN=SKI PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08782c-SKI_SMAD_bindc-SKI Smad4 binding domainDomainInterproscan
PF02437Ski_SnoSKI/SNO/DAC familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009061Homologous_superfamilyPutative DNA-binding domain superfamilyInterproscan
IPR014890Domainc-SKI SMAD4-binding domainInterproscan
IPR003380DomainSKI/SNO/DAC domainInterproscan
IPR037000Homologous_superfamilySki-like, DNA-binding domain superfamilyInterproscan
IPR010919Homologous_superfamilySAND-like domain superfamilyInterproscan
IPR023216FamilyTranscription regulator SKI/SnoNInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10005SKI ONCOGENE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046332Molecular FunctionSMAD bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0030514Biological Processnegative regulation of BMP signaling pathwayInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K26503SKI; Ski oncogene-TGF-beta signaling pathwayko04350deepkoala

Expression pattern
 Expression trend for OS493_000673-T1 global co-expression network
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