Detailed information of OS493_000521-T1 in Lophelia pertusa

Genomic Location: scaffold_1:7130234...7131891
NR annotation: KAJ7394696.1, hypothetical protein OS493_000521 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7YRX0Retina and anterior neural fold homeobox protein 2 OS=Bos taurus OX=9913 GN=RAX2 PE=2 SV=1
P53544Homeobox protein goosecoid OS=Danio rerio OX=7955 GN=gsc PE=2 SV=1
A1YEV8Retina and anterior neural fold homeobox protein 2 OS=Gorilla gorilla gorilla OX=9595 GN=RAX2 PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001356DomainHomeobox domainInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR000047Conserved_siteHelix-turn-helix motifInterproscan
IPR051306FamilyHomeobox domain-containing regulatorInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46123MIX-TYPE HOMEOBOX GENE 1-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09357PITX3; paired-like homeodomain transcription factor 3-Transcription factorsko03000deepkoala

Expression pattern
 Expression trend for OS493_000521-T1 global co-expression network
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