Detailed information of OS493_000462-T1 in Lophelia pertusa

Genomic Location: scaffold_1:5578610...5613839
NR annotation: KAJ7394642.1, Ubiquitin conjugation factor E4 B [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9ES00Ubiquitin conjugation factor E4 B OS=Mus musculus OX=10090 GN=Ube4b PE=1 SV=3
O95155Ubiquitin conjugation factor E4 B OS=Homo sapiens OX=9606 GN=UBE4B PE=1 SV=1
Q9HE05Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ufd2 PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10408Ufd2P_coreUbiquitin elongating factor coreFamilyInterproscan
PF04564U-boxU-box domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045132FamilyUbiquitin conjugation factor E4Interproscan
IPR003613DomainU-box domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR019474DomainUbiquitin conjugation factor E4, coreInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13931UBIQUITINATION FACTOR E4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000151Cellular Componentubiquitin ligase complexInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0030433Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan
GO:0034450Molecular Functionubiquitin-ubiquitin ligase activityInterproscan
GO:0036503Biological ProcessERAD pathwayInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10597UBE4B, UFD2; ubiquitin conjugation factor E4 BEC:2.3.2.27
Ubiquitin systemko04121deepkoala

Expression pattern
 Expression trend for OS493_000462-T1 global co-expression network
TOP