Detailed information of OS493_000291-T1 in Lophelia pertusa

Genomic Location: scaffold_1:3603271...3622426
NR annotation: KAJ7394480.1, Coatomer subunit beta' [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O35142Coatomer subunit beta' OS=Rattus norvegicus OX=10116 GN=Copb2 PE=1 SV=3
O55029Coatomer subunit beta' OS=Mus musculus OX=10090 GN=Copb2 PE=1 SV=2
P35605Coatomer subunit beta' OS=Bos taurus OX=9913 GN=COPB2 PE=1 SV=3
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04053Coatomer_WDADCoatomer WD associated region RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR016453FamilyCoatomer beta' subunit (COPB2)Interproscan
IPR001680RepeatWD40 repeatInterproscan
IPR050844FamilyCoatomer complex subunitInterproscan
IPR006692DomainCoatomer, WD associated regionInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19876COATOMERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0006890Biological Processretrograde vesicle-mediated transport, Golgi to endoplasmic reticulumInterproscan
GO:0006891Biological Processintra-Golgi vesicle-mediated transportInterproscan
GO:0030126Cellular ComponentCOPI vesicle coatInterproscan
GO:0005198Molecular Functionstructural molecule activityInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0030117Cellular Componentmembrane coatInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K17302COPB2, SEC27; coatomer subunit beta'-Exosomeko04147deepkoala

Expression pattern
 Expression trend for OS493_000291-T1 global co-expression network
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