Gene detail

Detailed information of OS493_000277-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_000277-T1	LATROPHILIN RECEPTOR-LIKE PROTEIN A	scaffold_1	3218916	3225212	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_000277-T1

CTGGGTGGTGATTGCAAAATAAGTTGTGCCGCAGAAAATGCTGCCATTTCTTCGCCACCTCGGGTTATATTATTTGTTATTGTGGTTTGCTGTTGGAGAAAAAATGAAGGCCAGTTCACAGATACCCAGTCTCCGACTACCATGCCTCCAACTCTACCTCTTGGCGGTCTACAACCTCCAGGAACTTCACCGCATTCGTCAACTGATGGTCAACCTCCCTTTCCCCCATCATCGTTAACGTCCTCTGTTGGGCAGCCTCCATCTCCACTACCATATCCTCCTTCTCATGGATCCCCACCATCTCCGCCATCTCATACATCCCCACCATCCCTACCATCTCCTCCTTCTCATGGATCCCCACCATCTCCGCCATCTCATACATCCCCACCATCCCTACCATCTCCTCCTTCTCATGGATCCCCACCATCTCACACATCACCACCATCTCCACCTTCTGGCAGCGGAGTAGTGTCAACTGGAAAACCCCTAACAACCACTGCGACAACTACATTCACAACTGTTCCTTCCCCTACTGGACCTGCTCCTGACTCTTTTCTTCTTAATACTTTACGCCGTACGTGTAGCCCAGATGTGATTCCAACCGATGACTCTATAGGACCGCAGTGGGATGACCACATCCGCCTTTTAATGCAGCGCAGTTTTCGGACATATGATGACTTTCTTACGTACAGTTGTAACAATCGGTGTGGACTGGAACAAAGGAACGCTTCAGTGATACTTTCGGATAGTGATCTACCCAGATGTTATTGTGATAAACTTTGTGATGAGTTCGGCGACTGTTGTTTTGACTTCGATTCATTATGCAGAAAACGTGTTAATCCTCAGACCAGCGCTCTGAGTTCGAATGAAACTTGCTTTGCACTAAAAAACGGACGAATAACTGCAAAGTACATTGGTTACGCAGTTTGGAGCACGTGCCCGCAGAACTGGACAGAAAGAAGCGTGCGACAAAAATGTCAAAACGACTTTTTAAGGAATTTGCCAGTATTCGACAAAGATAGCCACGTGACGTACAGGAATATATTCTGCGCGCGGTGCAATGGTGCTGTAAATACGTCATACTGGAAGATTAAATTTGACTGCAAGACATGGTTCAATGTAACAGCTTTGAATTTTGGCGATAGAATGACGCTTTTACTTCAGAATTGCTCGGTTGATAAAACACCTGAACGACACCAGTTGAACTTTTTAAAACGATGCATTCCTCGGTTTCAGGACTGCCGCAATATCAGCCAAGAGAAAAATGAACCTTACTGCCAAAGAGAATGTCTGAGGTACGCTTTCCCAGTCTGTGATGGCTTAGTCGAAAAGCTACGATTTAGAAATCCACAGTGTGCGTTGTGCAATGGTTTTAAACCAAATGATCTCGAAAGTAAATGTGAAGCTGGTAGTGGCGGCGGGATATCACCTCCTCTTACTATCCTCTTTGATTTTAGTTCCACATCAAAGTACAGTGTTGTAGTAGAAGATAGAAAAGAGAATGTCGTTAAACGAACTAAACAAGAGTTGTCTTGTGCCCTTCATGAGGTATATGATCCTTACGAAGGGAGCTGCAAAAAGATCGACTCAACCGAATCACAAACAGCTGGTCATGGGAAGAGCAAGAACAACGAAACCGAGGAAAAGCAAGGAAACAGAGCAGGATTGGATCCAAATTGTACTACATTCATAGCGTTTAATAAGACAGATTACTTCCAGCTTTCTAACGGCTCCGTTTACTTGAAACTTCACAACAAGATATACAGCAATACTACATACACGATTCGTGACAACATATTATTCCTGTGTGTAAATTTTTCAAGAAATTTTACTGCAACAGAAACAGAACCTGGCATCCAGCATAAGATCACTAAAACACCAGCATCTCTCCAACTTCTTACTTCAATCGGATGTATAGTGTCAATGGTTGCTCTTGTTCTGCTGCTGATTACGTATATCTTGTTTGCTGAACTTCGTAACTTACCCGGGAAGATCATAATAAACTTGACTTTTTCTCTGTTACTGTACCAATTTGTCTTCTTTTCAGCGGTTAAAACGGACGATCAAGAAACATGCCTGGCAGTCGCGGTTCTTCTTCATTACTTTGTTCTCTCCTCCTTTACGTGGATGAATGTTATGGCTTATGATGTGCATCGGATTTTCACTACTTCAGGAGTTGCGGCAAATCGACGAGGAAGCTACAAGAAACGTCTCATGCTGTATTGTCTGTACGCCTGGGGAGCTCCTGCCATTGTCGTCCTCATCTGCGTTATAGTTGATCATGTCAAACAGGGATCTATCGGATATGGGCAAGGGAAAGAGGAATGTTTTATATCACAGCCTCAAGCCATTCTTTATTCGTTTGTTCTGCCTGTTGCACTGCTTATGATCTTCAATCTGTTTGCATTGGGACACACTGTGATTCATATCGTCAAAACTCGAAAGAGAACCCAACAAGTAACCAATCAGCAACATAGTACCAGCGTGACCCTGATTTGTGTTAAAATGGCTTCAGTGATGGGTGTCACATGGATTCTCGGAATTGCTGCAAACTTCAAGGCTTTGTCATTCTTGTGGCACCCATATGTGATTTTAAACAGTCTTCAAGGCTTCTTTATTTTCCTGTCATTTGCTGTTAGTGGAAGAGCTCTAGAGTTGTACAGGAGTAAATTGACCACTGGCGTCCTAAAGAACCTAACAACAAAGGCTGGCAGGAACTGTAGCGTACAGTCCACTTACAACACAGAATGTCCTGATACTCAAGATACACGCCTATGA

Transcript

OS493_000277-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF01033	Somatomedin_B	Somatomedin B domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000832	Family	GPCR, family 2, secretin-like	Interproscan
IPR001212	Domain	Somatomedin B domain	Interproscan
IPR017981	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR036024	Homologous_superfamily	Somatomedin B-like domain superfamily	Interproscan
IPR053231	Family	G-protein coupled receptor LN-TM7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45902	LATROPHILIN RECEPTOR-LIKE PROTEIN A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007166	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_000277-T1 global RNA-seq network