Gene detail

Detailed information of OFRAG00000016853.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000016853.1	BETA-HEXOSAMINIDASE	tig00097820	290014	309809	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000016853.1

CTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATCGTGTCTGCTATCGTGTCTGCTATTGTGTCTGCTATTGTGACTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGACTGCTATTGTGTCTGCTATCGTGTCTACTATCGTGTCTGCTATCGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTTCTATCGTGTCTGCTATTGTGTCTGCTATCGTGTCTGCTATCGTGTCTGCTATCGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTTCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTGCTATTGTGTCTTCTATTGCCAACCGAGATATCAAAATCAGTCATGTCAATGGCGACCTTTACCGTTTTGACGTCGGTTACGCCGGGTTCTTTTCGCTGACACCAGGGGAAGAGTGGAGCACGAAGTTTCAAATCAAACACTGCATGCTTGGCCGCACGGATATGAACCCCAACTGGTGGGTGGTGGAGACCGACGCCTCGATACCTCAGCATCCCGTCATACTGGAGAACACGAGGAATCTCTCTTTCGTAAGTTTCCCCATGCATGTAAATCAACTTCGCTACAAGTACGACCTTCCCTTCTCTCTAGACTCCCGATTTCAAATGAACCAAGTCAGTCCCGAAGATTTGGGTACATTGTCAATTTTGCCTTCGGTGTCGACGAGTAAAAAGGTAAAGTCATCGAAAACTGACAAGCCGTTCAAATTGGCGTCGATGTCGGTCTACGTCATGTCGAAGTCGCTGATGCACGACGCCAAGAAGTTCGCAGATAAAAATAAACTGAAAATCGCCGCGAAAGTGCCAAATAGTGATGCCTTGTTTCTGGAGATAAAGGAAGATAAGGGCAGGGAGGACGGCGCCTATGAAATACAGTATCGATCAAGAGATAACACTTGCTGGATAAAAGGTGGCAGTGTTGTCGGAGTGTACTACGGCCTGCAAACACTGCTGGACATCGAGGGAGATAAAATCGGTGATTTCAGCATCGATGACTTCCCGAGATTCACCCACCGAGGGTTGATGGTTGATGTGGCTCGTAATTTCTTCACCGCCGACGTATTGTTTCGGCTGCTGGACGAGATGTCTCGGATAAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCGCAACAATGACCACGACAATGACCACAACAATGATCACAGCAATGACCACAACAATGACCACGACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACGACAATGACCACAACAATGACCACAGCAATGACCACAACAATGACCATGACAATGACCACAACAATGACCACAACAATGACCACAATAATGACCACAACAATGACCACAACAATGACCGCAACAATGACCACAACAATGACCACAACAATGACCGCAACAATGACCACAACAATGACTACGACAATGACCGCAACAATGACCGCAACAATGACCACAACAATGACCACAACAATGACCGCAACAATGACCACAGCAATGACCACAACAATGACCACGACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCGCAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAGCAATGACCACAACAATGACCACAACAATGACTACGACAATGACCGCAACAATGACCGCAGCAATGACCACAACAATGACCGCAACAATGACCACGACAATGACCACAACAATGATCACAGCAATGACCACAACAATGACCACGACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACGACAATGACCACAACAATGACCACAGCAATGACCACAACAATGACCATGACAATGACCACAACAATGACCACAACAATGACCACAATAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCGCAACAATGACCACAACAATGACCACAACAATGACCGCAACAATGACCACAACAATGACTACGACAATGACCGCAACAATGACTGCAACAATGACCACAACAATGACCACAACAATGACCGCAACAATGACCACAGCAATGACCACAACAATGACCACGACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCGCAACAATGACCGCAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAGCAATGACCGCAATAATGACCGCAACAATGACCACAACAATGACCACAACAATGACCACAACAATGATCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCACAACAATGACCTGCAGATTGGATCAAAGAGATCTTTTGATGTTGAGGAGAGGCAGTCATTGATATCTAACTTGGGAAGTGGACCTTTCTTGAATAACAGTGGTACCGGCTTTTATAGTAGCGACACTTTTATATCTTTGTTGAAATATGCCGGCGACCTTCACATTGAAGTGGTTCCCGAAATAGACATGCCCGGTCACTCCCATGCTGCAATTACCAGCATGTCCCGTCGGAGTAGCAAGAAGAATGATGAAACATACAAACTCTTGCGCACCAAGAAGTCAGGCCTCGGTCTGTCTCCGCAGCATTTCAGCAACAATGCACTTGACCCTTGCCTGAACTCTACTTACGTTTTCATCGAGAAAGTGATATCGGAAATCAATGAACTCTACAAGAAGAGTTCTCATCCTTTGAAAATTTTCCATTTTGGAGGAGATGAGGTCCACAATCAGAAGTTTGAAGAATCGGAAGATTGTAAACAAATTTTTAAAACTAACGGCAATGCTAGTAGGTCTAGCCTGCTTCAAATATATTTTAAACATCGACTTTCCGACATACTCGCAAAGTACGGACTTGTTGCGTCCGCTTGGGGAGATGCCTACTTCACTCAGAACTCGGTAATAAAGCCCGGCGATTTCAGCAGCGACAGCATTCCCTACGCCCAACCCTGGATGATCAAACAAGGCAGCATGTCACGCGCGTACACCCTAGCCAATGCTGGATACAAGACCATACTGTCAATGGCCGACAAACTGTATCTTGACCACCCGCAAGAACCGCACGTAGATGAACGAGGTCTCTACTGGGCCACCAGATATATCAACACTAAGAAGGTGCATTCATTTAATGCTGTTAATATCTACGCCTCAATGGACAAGAGGCCGGACTACGAATGTCTAGTATGCCCTAAACTAACTAGGCCAAAGAACATTGTAGGAATCGAATCGTGCGTGTGGACGGAGACGATTAAAAACGAACGTGACCTTCAAGAGATGATTTACCCTCGTCTCCATGCTTTTGCAGAGAAAGCTTGGAGCTTGCCAGCGTGGGAAAACACCGCCGCCACCGACTTCTCCTCGACCGCTTCCGTTTCCTCCTCTTCGGCCGCCGGTCAACAATCCGATTGGTCGCGATTGTCACGCATCATCGGTCGCAAGACATTGCGACGACTGGAGCGTGAAGATATGTACTACCACTTGGCTATGCCGGGTGTAAGATTAAATACAAGCGCAAACATAATCTCTGTCTGCGGTGAATTCTCAGCCATGAATATAAAGTTTTCCCTAGACGATGTAACTTGGCGAACAGCTACCAACCAGACTCTAACCCTGAAAAGCGGCAAGATCTTCTTCATCGTCAGGAGTTTCAACGATAGACGGAGTACGAACAGCGTCTCGGTTCACGTCAACAAAGGTCTTTTTAAGTTGATTGTCTACTAA

Transcript

OFRAG00000016853.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00728	Glyco_hydro_20	Glycosyl hydrolase family 20, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000515	Domain	ABC transporter type 1, transmembrane domain MetI-like	Interproscan
IPR008965	Homologous_superfamily	CBM2/CBM3, carbohydrate-binding domain superfamily	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR015883	Domain	Glycoside hydrolase family 20, catalytic domain	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR025705	Family	Beta-hexosaminidase	Interproscan
IPR029018	Homologous_superfamily	Beta-hexosaminidase-like, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22600	BETA-HEXOSAMINIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0004563	Molecular Function	beta-N-acetylhexosaminidase activity	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030203	Biological Process	glycosaminoglycan metabolic process	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-