Gene detail

Detailed information of OFRAG00000016186.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000016186.1	CULLIN	tig00097696	622940	659643	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000016186.1

ATGTTCCAGACAAATGAGGAGAGGACAGTGGAATACAGATGGCCTTTGATGCAACCCACTGTTAACCGTTTGCTAAGACAACAGGATGTATCTAGATCACAATGGCAAGACCTCTTCTGGAACGTACACAGTGTTTGTCTGTGGAATGACAATGGTTCAATGCAGATCTATGACCTTCTTCAGTTTGATATTCTGCAATTTATTAAACAAGCTAAATGTAAAATACTAAACAATGAACAGGACCTAAGCCTCTTAAAATCGTATATTAGCGAATGGAGCAAATTCTTTACCCAGTGCGATTATCTTCCAAAACCTTTTACTCAAATGGAGGTGACATTCCACAAATCTAGTATCAACAGCCTTATTGTTAATTGCCAGAAGAAAGGTGCTGCAACATCCACGACATATTGCGATGATAATATTGTACGTAAGTTGATGCTGGACAGTTGGAATGAGATGATTTTCACTTCTATCAAGGACCGCCTTCAATCGATAGCTATGGACCTCGTGTATAGGGAAAGAAATGGAGATATTGTGGACTCACAATTGGTCATCGGTGTAAGACAAAGTTACGTTAATTTACACCGAGAAAAAGATAAAAGATTGATATATCGAGAACACTTTGAAAAACAATACATTGAGGCTACCACTAGCTACTACACCCCGCGCACTGCCGCCTACCTAGCTACACACGGGGTGTTGGCTTACATGTCTTACTCTGAGAATCGTCTATTGGAGGAAGTGGAGCGTTCCATCAGATACCTGGCAGATGAAGTCAGCGTTAAACTTTTGACGGATACCTGCGTAGATATTCTGATTAGGACTTACATCGAATGCATTCTTGCAGAATGTCCAGCTATGATTAAAGAAAACAATTCCGAAAAACTACAATTGATGTTCCGATTGGCTGACCGCATTGAAAACGGCATCGACCCTATGTTGAAACACCTCGAGGAGTACATCGTGGAGCAGGCTATATCCGACATGGTGCAGTCGTCTCGTGTCATCTCGACAGACTCTGAACAGTATGTTGAGAAGCTATTATTCCTATTCCATCGCTTCTCTTTGCTCGTCAAGGAGGCATTTCTTGATGATCCTCGATTTCTAACTGCGCGAGATAAGGCCTACAAACACGTCGTTAACGACACTTCTGTGTTCCACACCGAGTACGGCTACAAAACACGGAGCGGCGTTTCCTGCAAAACTGCTCCGGAATCAAAATCTCCCGAATTGTTAGCCAACTACTGCGATATGCTCTTACGAAGGACTGCGTTGAGCAAGAAACTCTGTTCGGAGGATATCGAAGCGAAACTCAAGAACTTGTTGCTAGTGTTAAAGTATGTAAGAAATAAAGACGTATTCATTCGTTACCACAAAGCTCACTTAACTCGACGTCTCATCCTCGACAACTCCATTGACTCCGACCTCGAGGAGAACATGCTAGAATGGCTTAGGGACATTGGCATGCCTGCAGATTTTGTAAACAAATTGGCTCGTATGTTTCAAGATATCAAAGTCAGCAGCGACATCAATTCTGCTTTCAAATCTGAAAACCGAAACAACAACGAAACTAAGATGCCAGACTCCATAAATGTGAAGATTCTAAATACAGCCGCTTGGTCCCGCTACGGAGACAAGGTCACCGTTACTCTCCCCGTGCAGTTAGAGGATTACATCATGCAGATTGATGAATTCTATAGAACTAAACACAGTGGAAGAAAACTGAAATGGCACCACACAATGTCTAATGGAGTGATTACATTCTCGAATGAAATTGGAAAATTTGATCTTGAAGTGAACACATTTCAAATGGCGATTTTATTTGTATGGAATCAGAGGGACAATGAAAGTATACCCTATGAAGCTCTGAAACTTGCCACAGAACTTCCGGATTTAGAACTCAAAAGAGCTCTCTTGTCCTTGTGCGCATTCCCGAAACTGAAACGACAGTTGCTACTCTGCGACCTCGAACGCGGTACCGCCGACTCCTGCAACCAGTTGAACGCCGCGGACATCACTCCGCAGACTCACTTCCGCATTAACCAACAGTTCACCGTGATTAAAAACGGGAAACCTCAGAAACGAGCAAAAATCAATCTGATTGGTCGTCTGCAGCTGACCACCTCGTCGGAACAAAAGGATACGGATGACAGCATTATGCACCTACGAATCCTCCGCATTCAGGAGGCGATTGTGAAGATAATGAAAACACGTAAGAAGATCAACAACTGTCAACTTCACGCTGAACTCGTGGAAATGTTAAAGTTGATGTTCCTACCTTCTCGCAAGACGATCAAGGAGCAGCTGGAATGGCTCATAGATATGAAATTTATCAGCCGAGATGTCGACAATATCAATACCTACCACTACATCGCGTAG

Transcript

OFRAG00000016186.1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|Cullin

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00888	Cullin	Cullin family	Repeat	Interproscan
PF10557	Cullin_Nedd8	Cullin protein neddylation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001373	Domain	Cullin, N-terminal	Interproscan
IPR016158	Domain	Cullin homology domain	Interproscan
IPR016159	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR019559	Domain	Cullin protein, neddylation domain	Interproscan
IPR036317	Homologous_superfamily	Cullin homology domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR045093	Family	Cullin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11932	CULLIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0030674	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0031461	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0031466	Cellular Component	Cul5-RING ubiquitin ligase complex	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-