Gene detail

Detailed information of OFRAG00000010304.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000010304.1	UBIQUITIN-ACTIVATING ENZYME E1	tig00001901	92146	111186	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000010304.1

ATGTTAAATGATGATTGTATTGATGCAACGGGATATTTTACGAATTCCGAAGCCGATGGAATACCATGTTGTTTATGTTTCGACCATACAACTCTATCTAGAAATGGAGATAATAGGTTTGTAAGTTACGGAGAAATAAAAAATTGCAATTCTCTTGAAGATTTTAAACGAATTGATAAGAATTCATTTATTGAGATGAGTGGTAGAAAGATATGGAACTCTATTAAATCAGGAGATGTACTTCAGAATCCAAATTTGCTGAACAGGTTTCAAATGATTTGTTTTTCCGACTTGAAGAAATATCATTACTATTATTGGGTGTCATTTCCGACAATTGTCATTCCTGAAACTACTATCATTACAAAAATTACTTTTAGGGATAGATTTACAGATTCCCAGCGATCCAAAATCATTTTCCTTTATGATGAGCTCATGGCTTCGACGCGTTTAGCATTCTTTATTCTTGCCGAAAACACAGATGACTCTATGTCTATTTATAGATTTCACCAATTCGAGGAGGCAGTTGAAAAGCACAAAAAAGTTATAATTTGTTTCTGCGATCCCTGTTCTAATACGATGTACCCTGGATGGCCATTGAGAAATCTTCTTTTATTTACATCATCTCAATGGTCGTCTAAACTGCCCGATAGAACTGTGGAGGTGTTGTGTTTTAGGAATCGTTATGAGAAGGGTAAACGCTATAACGACCATTCCTTTACGATAAAGGTGAAATTGCCTGACGTAACATCGGAGAAAGATTTTGACCAAAATAAATTTAATACTGTGGGTTGGGAGAAAAATGACAAGGGAAAATACAGCCCTCGTTTTGTCAATCTGAGCTCTTCTATGGACCCTAAACGTCTCTCTGAATCTGCTGTGAAACTAAACTTACAATTAATGCGTTGGCGTATCATCCCGGAACTCGATCTTACAGCAATCGCTTCAACTCGTTGCCTTCTGCTTGGCGCCGGAACCCTAGGTTGCAACGTGGCCAGGTGCCTTCTGGGCTGGGGTGTTCACAAGATTACCCTGGTTGATAACGGACACATTTCATATTCAAATCCTGTCCGACAAAGTTTATTCACTTTCGAAGATTCGATGAACGGAGGTAAATCGAAAGCAAGCTGTGCAGCAGAGGCCATGAAACTTATTTACCCTGGCGTGGATGCCGTAGGTCTTCAATTATCTATTCCGATGCCCGCTCATAATATTCCCATCAGTATACGAGAGAGTGTAGAAGAAGACATTAATACTTTGACGAGGCTTTTCGACGAACACGACGCCATCTTTCTGCTCATGGACACTAGAGAAAGTCGTTGGCTTCCGACACTTATCGGGGCTAGCAAGAACAAGATTGTGATAAATGCGGCGCTGGGTTTCGACAGTCTGTTAGTGATGAGGCACGGCGTAAGGGATTCTATAGATATACCTAAAATGAGTGGAGACGCGCCCTCTCAACCCGGAAATACGCCCTCTCAACCCGGAAATACGCCCACTCAACCCGGAAATACGCCCACTCAACTCGGAAATACGCCCTCTAAACCAGATACGCCCACTACTAGCTCTATAGACACGCCCATTACTACAAGAAGTCTACTTCCTAAAAGTTTGCCAGGCTCTCGCCTCGGATGTTATTTCTGCAGTGATGTCGTAGCTCCCGGAAATTCCACAAAAGACCGTACACTTGACCAGCAGTGTACGGTCAGTCGTCCCGGAGTTTCAATGATTGCTTCTGCTCTTGCAGTTGAACTTTTGGTGTCAGTGTTAAGTCATCCACAAAGGGGAGCTGCTCACGCTACTCTCTCCCCCGGCCACGACTGGGCCGATGAAGCCGAGGATGACTCACCTTTGGGAAAAGTACCGCACCAGATTCGCATGTTCCTGTCCAGGGGCCAGTTGATGAATCCCGCCTGCGAAGCATTCGACAAGTGCACTGCGTGTTCTAGCATCGTACTGGACGTATATCGTAAGAGAGGTAACCACTTCTTATTTGATGTATTCAACGACATGCAATCCACTATACTCGAGGACTTGACTGGTTTGACTGATCTTCACAACCAAGTCATGAACGATCAGATTTGGGCTATTAGTGATGACGATTCCATCTGA

Transcript

OFRAG00000010304.1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E1\|ThiF\|ThiF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00899	ThiF	ThiF family	Domain	Interproscan
PF16420	ATG7_N	Ubiquitin-like modifier-activating enzyme ATG7 N-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000594	Domain	THIF-type NAD/FAD binding fold	Interproscan
IPR032197	Domain	Ubiquitin-like modifier-activating enzyme Atg7, N-terminal	Interproscan
IPR035985	Homologous_superfamily	Ubiquitin-activating enzyme	Interproscan
IPR042522	Homologous_superfamily	Ubiquitin-like modifier-activating enzyme Atg7, N-terminal, subdomain 1	Interproscan
IPR042523	Homologous_superfamily	Ubiquitin-like modifier-activating enzyme Atg7, N-terminal, subdomain 2	Interproscan
IPR045886	Family	ThiF/MoeB/HesA family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10953	UBIQUITIN-ACTIVATING ENZYME E1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000045	Biological Process	autophagosome assembly	Interproscan
GO:0000407	Cellular Component	phagophore assembly site	Interproscan
GO:0000422	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006501	Biological Process	C-terminal protein lipidation	Interproscan
GO:0006995	Biological Process	cellular response to nitrogen starvation	Interproscan
GO:0008641	Molecular Function	ubiquitin-like modifier activating enzyme activity	Interproscan
GO:0019778	Molecular Function	Atg12 activating enzyme activity	Interproscan
GO:0019779	Molecular Function	Atg8 activating enzyme activity	Interproscan
GO:0032446	Biological Process	protein modification by small protein conjugation	Interproscan
GO:0034727	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:0044805	Biological Process	obsolete late nucleophagy	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-