Gene detail

Detailed information of OFRAG00000003867.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000003867.1	INVERTED FORMIN-2	tig00000574	567325	605329	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000003867.1

ATGAACCAAGAAAACATTTACAACTTTGAGCCTTGTTCCGCCAAGGTATTAGCGTTACGCCGTCAAGGAAGCTCTGAATTTCATGACAGCGTTGACGTCGGAGAGACTTACGGAGCAATACTTGACAAGACATGTTTCTATGCCGAACAAGGAGGTCAGATATATGACAAAGGCTTTATTCATCATGAATACAAAGTTGATCTCTCGGTAACAAACGTTCAAGTGAAAGGAGGTTACATAATGCACATCGGCACAGTAATTGAGGGAACACTGACCGTTGGTGATGAAGTAGAGCTCTTCATTGATCAGGAAAGAAGACAGCCCATTATGGCCAATCATTCAGCGACTCACGTGTTAAACTTTGCTTTACGTAAAGTAATAGGAGAACTTCAACAAAAGGGTTCTTTAGTTGCACATGACAGACTCAGATTCGACTTTTCATCAAAGTCAGCCTTAACCATTCAACAAGTGAAAAAAACTGAAGAAATCTGCAATAAATGTATTGAAGATGATAAAGTGGTATTCATGCTGAATGTCCCACTAAATGATGCCAAGTTGATTCCAGGCCTCAGAGCAGTTTTCGATGAAGTGTACCCTGACCCAGTTCGAGTCGTTTCCGTTGGTGAACCCGTTACTGAACTGCTCAGCAATCCCGCGAGTAAAGCCGGAGAGAATACTTCCGTCGAGTTCTGCGGAGGAACTCACGTCCCCCGTACCGGTACTTTGGTCCACTTCACCGTTGTCTCCGAAGAGGCCATCGCTAAAGGCATTCGGCGAATCATTGCTGTTACCGGACCGGAATCCGTTAAGGCACAACACAATGAGAAAATGCTCAGAGCAGAAGTGAAGGGACTTCAAGTAAGAATCGAGAAAGCGCTGGAACAAAGTGCCAAGTTTCCGCATAAAAATATCTCCTCCGCCATGACGCTCATTAATGACGATATCTCAAAATCTCTTATTTCTTACTGGGTGAAAGATTTCTTAAGAAACGAATTAAAAACGTGCAAAAAGAATATTGACAATATGGATAAGGAAAAAAAACAGCAAATTGTGAATAACATTATTGACGAATGTAAAATTAAAATAGAAGAAAATCCCAACATCGATTTCATTGTTCATGAATTTCATTGCGACTCGAATTCAAAGGCTCTGGATAGTGCTATGAAACAGTACAAGAACTTATCGACCAACACTTCCTGTATGTTCTTCTCAGTTGACAAGGAGTTGGGAAAGATACTCTCAATGTGCTGTGTACCCAAGGAAGCGAACAGTAAAGGACTAATGGCTAGTGACTGGATAAACAATATCTCGAAGATAATGAATGGTAAAGGCGGAGGAAAGGCGGCATCTGCTCAAGCTACTGGCACTAATGTATCTTGTCTATCTGAAGATATTCACACACAAGTTAGAAACATCTTTACAATGCCGAATTCGAGGATTTACAACTCGCCATCAACAAGTAAACGAGATGAATTATTGGAGCGTCTTCAAAAGCAAAACAAGGAAGATAACAAAACGCTTACATCGACTCACAATGACAACAAATTAGATAGCAAGGATCATAAAAATTCCGATATTCGGTCAAGGATTAATAAATACAGAGAAGACACCTTACGCAAATCGCAGTCTCCTTCGTCCATCGACCACGTGACGTCGAAGAACGCCCTTAGGCGTGGACCCATCAGGAACCCAAATCATACGTCCAACAAAACCGTTTCTAGTGAATCTAGCTCGACCCCTAGTAATTTCCCGAACCGTGCTACCGGGTCCGGCCCCGGGAATACTTCTGCAAATACTTCCATCAACAATGGGCATCGGCCAACGATGAATAAAGTTTCAAAAGGAATTTATCCTATATCCGCGAAAACCGATCACCTATTTGGTAGAACGCAAATAGACCCTATGAAAGCATCTACTATTAATGGCGCTCCAGTTATAACTTCTTCTGCTTCCGGGTCGAGTGTAGATTCGACGAATAGGAGGATTCGCGTAGAAAGTGACGTGGTCACTGCCGAAAGTCCAGCGCGCCATTTAAACCAGGATGTAAAGGTGCGCGCAACGGTAGACCCGCACGAGGACGCCGTAGGGGTTCAGGATTCGTCGCTCGGTAACCCAGAACCAGAGAACACCGTTACGCTCGAGCCAACAGTCGGTACACCCGTACAACGTACCGACCACGGCGGTAAACGCGCCCCTACTGGAAGAACAATCCTGCGCGACAAGCGACTGTCGACGCCCGCGTTGGCAGCCAATCGAAATCGTTCTGCGGGCGTTCCGACCACGCCCAACTCGTCCGAGAAACGCAAATCTTCGACGAAGTCGAAGCCGTCGTCGCCGACGAAACGACGTTCTCTGCACTACAGGGAGCCGTCGAAACCGTCCGTGCTGAGCAGGCACACCGGTATTTCAATAGCCGACGCCGTTATTCCGGGTACTCCCGCGTTACGTAAGGCAACGGCAACTACGAGCGCGACGTCGACGCCGGTGAAACTCGTATCGACGTGTCGTGGCTCAAGGAAACCAGACTCTTCGGCAACAACGACGCCTACTCCTCGAAAGGCTGCGATAACGGTATTGGGTAATGCGGGATGCGGACTTGGCCAAGGAGGAAATGGGGACGCAGCTATTTCGGATGCTAGAGGTCGAGATATAAATGGAGATATTAAGCTATCGACGAGGATAGATTCAAATTCTACGCCAGCAGATAACGTTACCTCTCAACAACTCGGTAAATCAGCTATCGTAGATACTAGTGATAAGACCGTGCCAGGAAATAATAGAACTGTGGGTGTTAAAGGTGATGCTAATGAAAGCGAGGGCATCCTGAATGCAGTTATTGGTAGTGCGGATAAAGCTTGTGTTGGAGGAGTTGTTGCAGGAGTTACTCCGCCTATTGAAATAGCACCTGATGTAAACTTACATAAGTCTTCGGCTGAGGCGCTCGATCTTAATTCTAACCTCGCTAAGAAAGTAGAGGATTGCATCCCGCAAACAGGTCAAAACAAATGTACGGTGTTGAGAAAAGAAACGGATTACGTAACTACATGTAATATTCAGAAAACGGAAAGCATTTCGGTGAAAGAAGGTGCCGGGTTCGTTAGTATTACTAGTAAGGAAACGCCACGCTCGCCAAGCCACAACGAGGCTGGGGAGATCAGCATTACTAGCGGGGAAACAATTGGTTCTGCTGCGCAGAAATATTCCGAGGTCGAAAGAAAAGAAGATAATGGTTCTAGCAACTCGAAACGCAATCGAGCGGGTTTATGTAAGTTGAGGTCAAAGATCGATACCGCTCTGACCACAAGATTACACATGATATCAGCTGAACAATTTGTCACCGAACTCAGAACTCCTTCGAATAAGAAATTCAATTCGTTGAAAACCAAATTAAGAAGCCAGAACAAAGAATGGATTCAGAGCTTCAGGGATCATGATGGATTAGAGGTGCTGTTGAATGTCGTTGAGTTATTACCCCAGCAAAAGGTTAAAGATCTTCAGGCAGCTTATATGAAACTCGAGTTCATTGGACAGTGCGTAGAATGTATCAAAGAATTAATGAAATCTGAGGATGGACTCTCACATATGATAGAACATGCTCGATCAGTTGATCGACTCCTAGAAGTGATCTACGAACAACAGGGAGCGACCGAAAGCGGTAATGCACTCATTAAAACCCAAGTCTACGAACTTCTTTCGGCACTTACCGAGTACTCCAAAGAAGGTATGCAACTTGTATTCGACGCGCTGGAGAGATTCAGGAAGTCCAAGAACCAACGCTACCGGTTCAGCATCGTCGCCCAGGAACTCAAGACACAGACCGACCCCGCCTACTTGGCCGTTCTGATGGCTTTCGTGAACTGCGTTATCCTCTCCGGGGACAGCACGGAGGATCGCTGTTCACTGCGCAACGAGTTCATAGGACTAGGTGTTGGTGAAGTGTTGTTACGTCTGCATGATATAGAGGACCTCGATTTGCAGACTCAGTGCGACGTTTTCACGGAAGAACAGGAATTCGATCTCGCGGAATACATTACCAACGACGACAGCCACTCCGAGAAGTTCAATAATCTGTTCTTAACGGTTTGCAACACTCCAGAAAGCGAAAAGCTCTACTCAATTTTGAACATGTTATTGAAGATTGATCAGAATAACGATACCTGTCCGCAAATGTGGCAATTGATCGAGAAGAGCGTTCAGAAGGTGATTATTTCCGGTAACAAAAGCGAATTGCATAAACTGCAGACTCGCCTAGACTCCACCAGCACGACGTCGAACTTGGCCAATGTTTCTTCTACGTCTACGCCGTTGATCTTAACGGAAGAAGAATCCCAACGGAAACTTGATTTTCGGTCACGGATTGCCACTCCGACAATTTCTAGTTCGACTCAAACCGAATTCGCTGGGACTCAATCCGAATCTCCGAAAAATCACCTGGTTCCTGCGAACGTAGGGGGATCACAAGCCCCGCCTCCTCCACCACCTTTTTTGCCCAACGGATTTCCATCAACTATAGGTGTTGAGTTAACATCTAGTATAATTGCGGAAAATATAAAAAATAATGCACCACCGCCCCCACCACCACTACCACCAACGATGGGTGGTTCCCAAGTACCACCACCACCGCCTCCGCCACCACTACCACCAATGATGGGTGGTTCCCAGATACCACCACCACCACCAATGATGGGTTCATCGATACCACCCCCACCTCCTATGATGGGTGGTCCACCTCCACCACCTCCTATGATGGGTGGTCCACCTCCACCACCTCCTATGATGGGTGCACCACCACCACCTCCTATGATGGGTGGTCCACCACCACCTCCTATGATGGGTGGTCCTATGCCACCACCAGCTATGTCCAGAGCTTTTCAAATGCAAAAGATTCCAACCTTGAATCAAGACTTGCCCTCTGCTAAAAATAAAATGAAATCCGTGTGTTGGAACAAATTCAATGAAAATGTAGTCAAGAACGAGAACACTATTTGGTGTAAACTACACCGTCTGAAGAGAGCACTTAACTTTGATCTAAGTTCTTTCGATTCACTATTCTCAATAAAAAAAAAGGAGAAGTCTACTTTAATCAAGGAAGATAGCGTAGCTACCAGCAAATCTAACGCTAAGATTACCCTGCTCGACCACAAACGTAGTATGGAGGTAAGCATATTCTTGAGCCAATTTGGCGGAAATGCCTCTCAAAAAGAAATCATCCTTGATCTCGAGAACTGCTGTTACGTTAAATTGGATACGGATAAACTCAAAATGCTGCAAGCTCAACTGCCCAGTAATGAAGAGTTAGAGGTATTTGCGGATTTTCACGATGATGTCGACAAGCTTGGTAAACCTGAACGCTTTTTATATGCACTAATCCAACTTCCCAACTATACGTTACGTCTCGAAGCCATGCTGCTCCGAAGCGAATTCAAGCCGATGTACCACGAGCAGAAAGCGAATGCCGACTCTTTGATAGAAGTTGTTACTCGTCTCTTGTCGTGTGAACAGTTGGAGGTGTTCCTACGGCAGTGCATTGTATACGGAAATTACTTAAACGGGAATTCATACAATGGAAATGCATACGGGGTTAAGATTTCTTCTTTGTGTAAACTGTATGAGACGAGATCGTCGGTAGATTCTAGCATTACAGTATTACACTATATTGTAAATTCTTTACGTGCCAATCAGCCAAATGTCTTGACATCTATGTATGAATTAAATATACTTCTCAAGTCTACTCATAGAATAAATGTTAGCGGGATTAAAGGTGAAATTGAGGTCATATCAAAACGAGTAAATCAATTAAAAAATAAACTAAATAATCAAAATGATGATAAACTTTCTTTACAATTCCAAAGTTTCTTGAAGGAAGCTATTGAAGATACTGAACACCTCGAAATATCTATAAAGAAAATAGACGAATTGTCTTTATCGCTATCGGAATATATATGTGATCCACCTCCACCGAAATTCATACTAGAGAATTGTTTGGCAGACTTTCATAATATCATCAGCAATATGGAGAAATGTGAAAAGGATAATATAAGAAAAAAAGAGATAGAGGAAAAGAGAGAGAAGCGTAAAAGAGAAAACGAAGAAAGACAACTTCAAAAGCAATTTTCTGAACACAGCGACGGAGAAGTGGAGCTGTGTGAACTCGAGCAAATCTTAAGCAACGTGAAACGAGGAAATTCCAGTCGGCGCAGAAACGTGCGTCCAAAATTTCAATTTAACTCCGGAATGAGATTCGAAAATGCAACTTTGTAA

Transcript

OFRAG00000003867.1

Protein

OFRAG00000003867.1

MNQENIYNFEPCSAKVLALRRQGSSEFHDSVDVGETYGAILDKTCFYAEQGGQIYDKGFIHHEYKVDLSVTNVQVKGGYIMHIGTVIEGTLTVGDEVELFIDQERRQPIMANHSATHVLNFALRKVIGELQQKGSLVAHDRLRFDFSSKSALTIQQVKKTEEICNKCIEDDKVVFMLNVPLNDAKLIPGLRAVFDEVYPDPVRVVSVGEPVTELLSNPASKAGENTSVEFCGGTHVPRTGTLVHFTVVSEEAIAKGIRRIIAVTGPESVKAQHNEKMLRAEVKGLQVRIEKALEQSAKFPHKNISSAMTLINDDISKSLISYWVKDFLRNELKTCKKNIDNMDKEKKQQIVNNIIDECKIKIEENPNIDFIVHEFHCDSNSKALDSAMKQYKNLSTNTSCMFFSVDKELGKILSMCCVPKEANSKGLMASDWINNISKIMNGKGGGKAASAQATGTNVSCLSEDIHTQVRNIFTMPNSRIYNSPSTSKRDELLERLQKQNKEDNKTLTSTHNDNKLDSKDHKNSDIRSRINKYREDTLRKSQSPSSIDHVTSKNALRRGPIRNPNHTSNKTVSSESSSTPSNFPNRATGSGPGNTSANTSINNGHRPTMNKVSKGIYPISAKTDHLFGRTQIDPMKASTINGAPVITSSASGSSVDSTNRRIRVESDVVTAESPARHLNQDVKVRATVDPHEDAVGVQDSSLGNPEPENTVTLEPTVGTPVQRTDHGGKRAPTGRTILRDKRLSTPALAANRNRSAGVPTTPNSSEKRKSSTKSKPSSPTKRRSLHYREPSKPSVLSRHTGISIADAVIPGTPALRKATATTSATSTPVKLVSTCRGSRKPDSSATTTPTPRKAAITVLGNAGCGLGQGGNGDAAISDARGRDINGDIKLSTRIDSNSTPADNVTSQQLGKSAIVDTSDKTVPGNNRTVGVKGDANESEGILNAVIGSADKACVGGVVAGVTPPIEIAPDVNLHKSSAEALDLNSNLAKKVEDCIPQTGQNKCTVLRKETDYVTTCNIQKTESISVKEGAGFVSITSKETPRSPSHNEAGEISITSGETIGSAAQKYSEVERKEDNGSSNSKRNRAGLCKLRSKIDTALTTRLHMISAEQFVTELRTPSNKKFNSLKTKLRSQNKEWIQSFRDHDGLEVLLNVVELLPQQKVKDLQAAYMKLEFIGQCVECIKELMKSEDGLSHMIEHARSVDRLLEVIYEQQGATESGNALIKTQVYELLSALTEYSKEGMQLVFDALERFRKSKNQRYRFSIVAQELKTQTDPAYLAVLMAFVNCVILSGDSTEDRCSLRNEFIGLGVGEVLLRLHDIEDLDLQTQCDVFTEEQEFDLAEYITNDDSHSEKFNNLFLTVCNTPESEKLYSILNMLLKIDQNNDTCPQMWQLIEKSVQKVIISGNKSELHKLQTRLDSTSTTSNLANVSSTSTPLILTEEESQRKLDFRSRIATPTISSSTQTEFAGTQSESPKNHLVPANVGGSQAPPPPPPFLPNGFPSTIGVELTSSIIAENIKNNAPPPPPPLPPTMGGSQVPPPPPPPPLPPMMGGSQIPPPPPMMGSSIPPPPPMMGGPPPPPPMMGGPPPPPPMMGAPPPPPMMGGPPPPPMMGGPMPPPAMSRAFQMQKIPTLNQDLPSAKNKMKSVCWNKFNENVVKNENTIWCKLHRLKRALNFDLSSFDSLFSIKKKEKSTLIKEDSVATSKSNAKITLLDHKRSMEVSIFLSQFGGNASQKEIILDLENCCYVKLDTDKLKMLQAQLPSNEELEVFADFHDDVDKLGKPERFLYALIQLPNYTLRLEAMLLRSEFKPMYHEQKANADSLIEVVTRLLSCEQLEVFLRQCIVYGNYLNGNSYNGNAYGVKISSLCKLYETRSSVDSSITVLHYIVNSLRANQPNVLTSMYELNILLKSTHRINVSGIKGEIEVISKRVNQLKNKLNNQNDDKLSLQFQSFLKEAIEDTEHLEISIKKIDELSLSLSEYICDPPPPKFILENCLADFHNIISNMEKCEKDNIRKKEIEEKREKRKRENEERQLQKQFSEHSDGEVELCELEQILSNVKRGNSSRRRNVRPKFQFNSGMRFENATL

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01411	tRNA-synt_2c	tRNA synthetases class II (A)	Family	Interproscan
PF02181	FH2	Formin Homology 2 Domain	Family	Interproscan
PF02272	DHHA1	DHHA1 domain	Family	Interproscan
PF06367	Drf_FH3	Diaphanous FH3 Domain	Repeat	Interproscan
PF06371	Drf_GBD	Diaphanous GTPase-binding Domain	Repeat	Interproscan
PF07973	tRNA_SAD	Threonyl and Alanyl tRNA synthetase second additional domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003156	Domain	DHHA1 domain	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR010472	Domain	Formin, FH3 domain	Interproscan
IPR010473	Domain	Formin, GTPase-binding domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR012947	Domain	Threonyl/alanyl tRNA synthetase, SAD	Interproscan
IPR014768	Domain	Rho GTPase-binding/formin homology 3 (GBD/FH3) domain	Interproscan
IPR015425	Domain	Formin, FH2 domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR018163	Homologous_superfamily	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	Interproscan
IPR018164	Domain	Alanyl-tRNA synthetase, class IIc, N-terminal	Interproscan
IPR018165	Domain	Alanyl-tRNA synthetase, class IIc, core domain	Interproscan
IPR027649	Family	Inverted formin-2	Interproscan
IPR042201	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46345	INVERTED FORMIN-2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004813	Molecular Function	alanine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006419	Biological Process	alanyl-tRNA aminoacylation	Interproscan
GO:0016043	Biological Process	cellular component organization	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan
GO:0043039	Biological Process	tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-