Gene detail

Detailed information of OFRAG00000001377.1 in Osedax frankpressi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OFRAG00000001377.1	RNA BINDING PROTEIN PUMILIO-RELATED	tig00000313	332467	377294	-

Gene Structure

More details in Jbrowse Sequence

CDS

OFRAG00000001377.1

ATGAATATAATTAAATTAAAAGCATCTTTGGGTTACAAAATTCAACATGATTTAGCCGCAATTGATATTCATTTGACTTCTGATTTGAATTCTTCGAAATCTCTTCATGGATTAAAAAAGCAGTTGGATGAAGCAGTAGGAAGCGCTTCCCGAATCGCTAGTTCCGAAGCTTCCGTAAATCGTAGCCGGCAATTATTCCGTGAGATCGCTACCCGGGGCTCTATTTGTTTCGATGTCTGCCAGCATTTGTATCCGCTATGTTCTAACCTCTACCACTATAGCTTCCAGGCCTTTCTTAAGATCTACGATGAGTCGATTATGCATTCCGATAGGGCCGCAGTAAAAGTTATTGTAGATCGTATCATCTCAAATTCATTCACAACAGTAAATCGCACACTCCTTGAAAAAGACAAGTTTATTTATTCACTTCTATTGGCTATTGAGATGGAAGATGCTAGTGACTCTGTTGGTCCAGGAGAGAGAGAATTCCTAATTTCACCTCTTTTCGCCGGAGTTGTTATCAACCAATCTCTTTCCTCTAATGGAACGCAATATCAAGTCAACGACGGAAAGAAGGATTTGTCAAAGAAGCCTTTTGATTGGATGACCGACGATCAGTTTGCTAATCTTCAGATTTTGGCGACTTATTTTGATTGGTTTAAAGATATATTCGATAGGCTGCAACGCGACGGAAAAGAACTCCAATGGAGACTATTATGCGAACACAGTCAACCAGAAATACAGTCACTTCCGGATAAAATGGATTCTCAGTTGACAAACTTACAGCGAGCTCTTGTCATTCGGGCAGTAAGACCTGATAGAATTATTCAAATTTCTTCATGTTTCATTTCTACTGTACTGGGAAAAAAATTCGTCGGCGAGGTGAACTCCGATTACGGTTACGTATTGAAACAGAGTTCCTGTTGCACGGCTATTCTGATCGTAGCTTCCGAACGTGACTCAGCTCTACGTCTCGTCGTGGACCTGTCTTCGAGGCGTCAGAGTGAAGTCGAACACGTGGTTGTAGGTGGAGCCGACAGCAGCGTTGACGAAAAGAACATAAGACAAGCACTAACAACTTGTATGACGAACGGAACTTGGTTAGTTATTGAAAATGCTCACAATTGCATTCCATTATTATCAAGTCTCGAAACAATTTTCGAGCAAGCTTCTACAACATCTTCAGAAGACGTGAACGAAGATGACATCCTCACTTACACTCCGAATATGAATGCAAACTTTCGCTGTGTTCTCATCGCTACTCTCTCCGACCATCTTTTGCTTCCCATTCACGTTATTCAGAACTGTATTTTGATTGTCATCGATTGTCCAAAGACCATTAAAGATAATATGTTGAGACAATTCTACTCTATGGACACTGAGATCATTAAGAAATCAACTAAATCCGAATTCCTGCCTCTCCTACATAACATTTGCTATGTACATTCTGCCATTCAACATAGGGCAAGGTACAAAAAATCTGGATGGAATGTTGGAAGCGATTTAAATGTTACATCATCACAATTTTCCGAATCTCTGACGGTGTTGCTGAGAGAGTTGCAAGATAGTCAGCCCTGCGTGAATACTTTGGATGGTTCCGTCGGTACCAAGCAGATGTCCTGGTCGGCTATTAGATACTTTATGTCCGAGGTAATCTACGGAAGCTGTATTTCCGACTACGTTGATCAAACCTGTTTAAATTCAATGTTAGAATATTGGATCTCTCCATTTGCAGTTAAAAAAGAATTTGAACTCGCTAAAGTAAAATACAAGTTGCCTTCAGTCTTCACAAGCCAATCAAATGTGAAATTCTCTCAGATCCTCTTAGCTGTAGAATCTTTAAATTCTCATCTTTTTGAACAAGCTGAAGCTTGCAATCTTCATGCTTCTACTGAAACTCTACTCGGAGAAGACCAATATCTCTTTACTCGCCTGTGTAGCCTCTATGACCTGTTTCCCCGTTCGAACTCTCTGATTGGTCAGGTGGTGGGTAATTGCCACGCCCACGGACTTCCCTTTAGTAACATTAGTGCTACCAGCAATCACAACTCCGTGATCTATCGAGGGGTACAATCTAGTTGTTCCGTTGCCGCAAACTCTTTAAGAAAGGATGCGGATTTGTACGACATCTGCAACCAAATCCTCGCCAAACTTCCTAAATCATATAGCAAGGATTACATTAATGAAAGGGTCAGACGAATCGGAGGATATACTTGTTTCAATCTGTTCATTCTTCGAGAGCTAGAAATTCTCTACGACGTATTGGCTGAAATTAAAAACACTCTAACTGCTTTACGCAATGCTTGCGAAATTGATAACAATTACGGGGACCATTTAACTTACGACATGATTGAAGCCGCAGATGAACTGATTATTCAGGTAATTCCCAATAAATGGAGAATACTTTTGGGAGCTACAGCGCCACCTATTGGACAGCCAATAATTGCATTAATTAACGACCTTCAAAATAGAACCCAACATTTTGAGAAAATACTTGTTCTGGGTCGTGATAAGATGCCAGCTTATTGGTTGGGAGCTTTCAGTAATCCCAGCGCCCTTTTCGCCCTGCTTCGGCTTGAATCCTATAAATCGTCTTCGAACTCAAACAATTGCAACTTCGAAATGATTCCGCTACAAACTGAAATAACAGCTAGGGATAAGGATCACATCCGCGACCCTCCTTCCGAGGGCATGTTTGTTTACGGATTGTATGTCTGGAATTCGCTTTGGGAGAAGACCAACGGAGAGCTTCAGGATGCTCCTCCTACTTCTAGACACGCCTACTCAGCTCTTCCAGTTGTACACGTTACATGCAACCAGAGCCATAATGACAAAATACCGAATATAGACCCAATGAAAACTGTGGAAACATACCAATGCCCCGTTTACCATTCCACGAACGTTTGTCAAACACCCGTCACTATTATAGATATGTGTAGGTCTGGCATATCCGCTCAACGATGGTCCTTAAGAGGTCTTAAGGATGATGCTGCGGTTGGTTATTACTACGAACGATCTGAGAATGATAGTATTTCACAACAGTATGGTAACAAAAAATGGGCTATTGGTGATGACAACGTTGTTATACAGACAAGGAATGCCGTTTCGGAGCTCGAAAGGGATTTTGATGCTTTCTCATTCACTGAAAATACTGAGAACATACAAACACAGCAGCCAACAAATGCACCCATTGGTGGAAAACAGGGAATATGGGAGTCGGAGTCAAGAAATACAACTAAAGATGGAGTCGTTGAAATCAATGTTGAAACATCGGCTCAAGCTAAAGATACTTCGCAAGCTCAGGGCAAAATGTTTGGTCCGTGGACTAATAGGAGTGTAGACAGTACTACTTGGGCTCCTGCAACTACTTCTACTGCTACCAGCAATAATCCTGATGTTACTGGTACTCAGCACAATGTCTCTGTAGTCCCTTCTGCAAACGCTAGTAGGACTAGGGAAATGGGTGCCTCGATTCTTTCTCCAACTGAAAATGGATCACTTGGAGTGAACATGGCGGAGTATGTATTGGGAAGCAGTTCTCCTTCTCTACAACAACCTGTTAACGCAAAAGATGCAATTCGAATGCACCATCACATCAATAAAAGATATGGAGCCAACTCAGATGTAGGCTCAAATATAGTTGATCGGGGTACCATCCCGAATCCCTTGACCGTTGCCACTGCAGCTGTCGCTGCCGCCGCCGCCGCCGTAGCCACTGGTCAAGCCGTGTTGACGGCACCGGTCTTGGTACAATCAGGCCCCGTTGCAGGAGTTGTAACTTCAGCCTCATCCGTAACAATACCTGGAGTAACATACGCTGGTCAACTGACTACTGCAGAACAACATTTACACCATGATCTTCAAAATATTGATCATAATTTATATAGACCTCAGCCTCTATTGGACCCGTCGATTCTAGCCAATCAGAGACTGCCTCCTATACCTGGTGCACCATTGCAACCTCCACCTAATACTGGCGCTGCACTACCCTTAAATAAACCGATCTTGCCTCTACTGGTTCCAGGAGACCACGCCCATCACGGACCTCCCCCTCCCCATATTTTTCCCACAGCCTACCCGGACAGTTTTGATATACCCCCACCCCCGCTTACCCATCCTCATCTCACTGGAGAGGTAATGGGACAGTCTCTGGACTCACCTAGTTATGACCTTCAAAATCTCTATAGGCATCAGACTGCCCAGCAAATGCTGAACCAACAACAATATGCTATGCCACACCAGCAACTCAGTATGGGTCCACCCCAGGCTTCCGCAGTTAGTCCTTTTGTTCCTCCAAATCCCGCATATCTTGATGGATTTACTCAATTACAAATGCAAGCCGCCGCCGCCGTCAATCAATACCAAATGCTACCCGCCTACTATGACCAGAATGGTCAATTGGTAGCAGCCAACGCTACAGCTGCTCGCACATTGTCCGGTACCCCTATACGTCTAGTATCCCCAGCTCCTATGGCCATGGTTGGTCAGAATCCGCCAGGAACCAATTCGTTATTCAACCCCATGGGTATGCATTCTCCCGCATTTAATGCAAATGCTGCAGCTGGAGCTATTGGATCAGGTGGGAAGAGAGAGTCCTCCGTGGAATTCAAACGACCTTCGCCCTCATCGCAACAGTTCTTTAGTAATGCCTCACCAGTGCAATCGTCTACACCCCCAGCTAACCTCAGTGTTGGAGCTGGTAGAATGCCATATTCTATGGCTCCGGGAGCAGAAGCCAAATTCAGAAATCAGTCTTCCATGTTCATTCCTGCTCCGAATTCGCTGATCCCCGGTACCTTCACAAATAACAACTCAATGCCACCACATGGATCTACAAAGGATATCTGTAGGAGTCGTCTGCTGGAAGATTTCCGTAACTCTCGTCTACCAAACCTTCAACTCACAGACCTCACTCAACACGTTGTTGAGTTCTCACAAGATCAGCATGGCTCTAGGTTTATACAACAAAAGTTGGAACGGGCGTCACCCCAAGAAAAGACAATGATCTTCAAAGAAATCCTGGATAACTCTTATGCTCTGATGACGGATGTGTTTGGTAATTACGTAATTCAGAAGTTCTTCGAATTTGGCTCCACGGAACAACAGGAAACGCTTGCTTCGCGTGTCAGAGGTCATGTTCTACCCCTCGCTCTGCAGATGTATGGTTGTCGCGTGATTCAGAAAGCTCTGGAGAGCATTCCATTGGAAATGCAGATTGAAATCATCACAGAATTGGATAAGCATGTTTTAAAATGTGTCAAAGATCAGAATGGAAATCACGTAGTTCAAAAATGTATAGAATGTGTAGAACCAGCAAGACTTCAGTTCATTATTGATGCTTTTAAAGGTCAAGTATTTGCCCTTTCCACGCATCCTTATGGGTGTAGAGTAATTCAACGCATTCTTGAACATTGTACTGCTTCTCAAACTGCTGCAATTTTAACTGAACTTCATGACAGTGTGGCAAGACTTGTACAGGATCAATACGGTAACTACGTGATTCAACACGTCCTTGAGCATGGCCGACCAGAGGATCGCAGTAAGATTGTGCGGGGAATTCGAGGCCGTCTATTGTCACTGAGTCAGCACAAGTTTGCATCCAATGTGGTGGAGAGGTGTGTTACCCACTCTCCAGTTGAAAGAGCTGCTCTCATTGAGGAAGTGTGTAATATGACGGACAATGGATTGTCTACGATGATGAAGGACCAATTTGCAAACTACGTGATCCAGAAGATGATTGACACTGCAGAACAACCTCAACGCAAAATGCTGATTCAAAAGATTCGTCCTCATTTCGCCACATTACGCAAGTATACGTACGGAAAGCATATTCTCGCCAAACTCGAAAAGTATTATATTAAGAGTGCCGCAGACTTGGGAGCCATCGGAACGGGAACACTATTGTCCCCGGTGATTGGACCCGGGCCGTCCGTGGTCAGCGGGGTTCTGTAG

Transcript

OFRAG00000001377.1

Protein

OFRAG00000001377.1

MNIIKLKASLGYKIQHDLAAIDIHLTSDLNSSKSLHGLKKQLDEAVGSASRIASSEASVNRSRQLFREIATRGSICFDVCQHLYPLCSNLYHYSFQAFLKIYDESIMHSDRAAVKVIVDRIISNSFTTVNRTLLEKDKFIYSLLLAIEMEDASDSVGPGEREFLISPLFAGVVINQSLSSNGTQYQVNDGKKDLSKKPFDWMTDDQFANLQILATYFDWFKDIFDRLQRDGKELQWRLLCEHSQPEIQSLPDKMDSQLTNLQRALVIRAVRPDRIIQISSCFISTVLGKKFVGEVNSDYGYVLKQSSCCTAILIVASERDSALRLVVDLSSRRQSEVEHVVVGGADSSVDEKNIRQALTTCMTNGTWLVIENAHNCIPLLSSLETIFEQASTTSSEDVNEDDILTYTPNMNANFRCVLIATLSDHLLLPIHVIQNCILIVIDCPKTIKDNMLRQFYSMDTEIIKKSTKSEFLPLLHNICYVHSAIQHRARYKKSGWNVGSDLNVTSSQFSESLTVLLRELQDSQPCVNTLDGSVGTKQMSWSAIRYFMSEVIYGSCISDYVDQTCLNSMLEYWISPFAVKKEFELAKVKYKLPSVFTSQSNVKFSQILLAVESLNSHLFEQAEACNLHASTETLLGEDQYLFTRLCSLYDLFPRSNSLIGQVVGNCHAHGLPFSNISATSNHNSVIYRGVQSSCSVAANSLRKDADLYDICNQILAKLPKSYSKDYINERVRRIGGYTCFNLFILRELEILYDVLAEIKNTLTALRNACEIDNNYGDHLTYDMIEAADELIIQVIPNKWRILLGATAPPIGQPIIALINDLQNRTQHFEKILVLGRDKMPAYWLGAFSNPSALFALLRLESYKSSSNSNNCNFEMIPLQTEITARDKDHIRDPPSEGMFVYGLYVWNSLWEKTNGELQDAPPTSRHAYSALPVVHVTCNQSHNDKIPNIDPMKTVETYQCPVYHSTNVCQTPVTIIDMCRSGISAQRWSLRGLKDDAAVGYYYERSENDSISQQYGNKKWAIGDDNVVIQTRNAVSELERDFDAFSFTENTENIQTQQPTNAPIGGKQGIWESESRNTTKDGVVEINVETSAQAKDTSQAQGKMFGPWTNRSVDSTTWAPATTSTATSNNPDVTGTQHNVSVVPSANASRTREMGASILSPTENGSLGVNMAEYVLGSSSPSLQQPVNAKDAIRMHHHINKRYGANSDVGSNIVDRGTIPNPLTVATAAVAAAAAAVATGQAVLTAPVLVQSGPVAGVVTSASSVTIPGVTYAGQLTTAEQHLHHDLQNIDHNLYRPQPLLDPSILANQRLPPIPGAPLQPPPNTGAALPLNKPILPLLVPGDHAHHGPPPPHIFPTAYPDSFDIPPPPLTHPHLTGEVMGQSLDSPSYDLQNLYRHQTAQQMLNQQQYAMPHQQLSMGPPQASAVSPFVPPNPAYLDGFTQLQMQAAAAVNQYQMLPAYYDQNGQLVAANATAARTLSGTPIRLVSPAPMAMVGQNPPGTNSLFNPMGMHSPAFNANAAAGAIGSGGKRESSVEFKRPSPSSQQFFSNASPVQSSTPPANLSVGAGRMPYSMAPGAEAKFRNQSSMFIPAPNSLIPGTFTNNNSMPPHGSTKDICRSRLLEDFRNSRLPNLQLTDLTQHVVEFSQDQHGSRFIQQKLERASPQEKTMIFKEILDNSYALMTDVFGNYVIQKFFEFGSTEQQETLASRVRGHVLPLALQMYGCRVIQKALESIPLEMQIEIITELDKHVLKCVKDQNGNHVVQKCIECVEPARLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCTASQTAAILTELHDSVARLVQDQYGNYVIQHVLEHGRPEDRSKIVRGIRGRLLSLSQHKFASNVVERCVTHSPVERAALIEEVCNMTDNGLSTMMKDQFANYVIQKMIDTAEQPQRKMLIQKIRPHFATLRKYTYGKHILAKLEKYYIKSAADLGAIGTGTLLSPVIGPGPSVVSGVL

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00806	PUF	Pumilio-family RNA binding repeat	Repeat	Interproscan
PF03028	Dynein_heavy	Dynein heavy chain region D6 P-loop domain	Domain	Interproscan
PF18198	AAA_lid_11	Dynein heavy chain AAA lid domain	Domain	Interproscan
PF18199	Dynein_C	Dynein heavy chain C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001313	Repeat	Pumilio RNA-binding repeat	Interproscan
IPR004273	Domain	Dynein heavy chain region D6 P-loop domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR033133	Domain	Pumilio homology domain	Interproscan
IPR033712	Domain	Pumilio, RNA binding domain	Interproscan
IPR041228	Domain	Dynein heavy chain, C-terminal domain	Interproscan
IPR041658	Domain	Dynein heavy chain AAA lid domain	Interproscan
IPR042219	Homologous_superfamily	Dynein heavy chain AAA lid domain superfamily	Interproscan
IPR043160	Homologous_superfamily	Dynein heavy chain, C-terminal domain, barrel region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12537	RNA BINDING PROTEIN PUMILIO-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0008569	Molecular Function	minus-end-directed microtubule motor activity	Interproscan
GO:0010608	Biological Process	post-transcriptional regulation of gene expression	Interproscan
GO:0030286	Cellular Component	dynein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-