Gene detail

Detailed information of OALVG00000035556.1 in Oasisia alvinae Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OALVG00000035556.1	NIBRIN-RELATED	tig00090465	1887289	1902573	+

Gene Structure

More details in Jbrowse Sequence

CDS

OALVG00000035556.1

ATGTGGGTGTTAACGTCATTGAGCAGAGCAGAAGAGAAGTACCACCTGTTGACTGGGCAAGAGTATACCATTGGCCGCAAGGGCTGCGACATCCTCATAGCCAATGACCAGTCCATCAGTCGTAAACATGCCTCATTCCATGTTTCGCATCCAGAGGCAAACATTTCACACCCCCACAAGCCTCCCATCCTCACTTTCACAGACATGTCAAAGCTGGGGACATTGGTGGGAGACACACACGTCAAGGGCAGGCAGAAACAGGTGAAATCAGGTGACATTCTCGTCCTGGGAACTGTTGGGATTAGCAAATACAGGGCTGACTATGAACCTTTCATATGTACCACATCCTGCTTAGACCCAGCATCCAAACGCAGCACGAAGCAGCTGATGGTTCGACTGGGCGGCCATGTTGTCAGCGACTGGCGCAAGGAATGTGAACTGTTGCTCATGAACAGTCTAAGTGTCACCGTCAAGGTGATCTGTGCACTTGTGTCACTCAAGCCAGTTGTGTCCTTACAGTATTTGGAGGACTTAGTACGGTCCTACGAGATCAGAACAGAACAACCAAAGCCAGACACCTATGTGCCTGTCCTTGCCGAGTCCCAACTCAACCCTCTGGACGTGTCCTTCAAGGCTGACCCTGTCCGCAAGACGCTCTTCCAAGGCAAGATCTTCATCTTTCTGTCTCCAAAACAGTTCAAGAAGCTGAGTCTGGCCGTGGAGCTGGCAGGAGGCACACCCATGTTGATGGAGGAGGGCACAGATGACAACGAAGATGACATTCTCATCGGGGAAGAGACGTGCGTCATGCAGTGTGATGCCGACGAAAATACGCAGACAATGTCCCAGAATGCCCGGGACTGGCTGCACTACGTGCGGGACCTACTTAAGAGAAATGGCAAGCGGATGATCTCTGACTCAGAGCTCGGCTACGCTGTGTTGTACTGCTCCATTGACAGATACTGCAATGCAGACAAGGAACTTGCTCCCGTGGGGGGTGTCACTTCCCAGAGTCTGTCCCAGATCGTGCCCCAGACGGTCCCAGACAACACAGAAGTTGTGTCTGTCGATCCGGCATGCACAACGACCCATGCATTTGACAGAGTGAGACACCCAAGTGAGCCGTCGGTCGTCCCAGAAACAGAATCACTTCCGTGTGTACAATCACGAAGTGGACTAGTAGCGCCCTCTAGCACCACTACTGTCCCACCCACTGAGGGAGCATCGCTTGTGGAGGAAAGCTGCAGGGTTCTTGTCCAGGATTCTTGTAGAAAACGTGAGCATGATGAGTCGGAAACACTGTCATCGCAGAAACGCCCAAAAATGATGGACAGCACAAATTACACCTGCAGTGTGCCCGTCATAAAGGAGGAGATAGAAACACCAAAGAAAGTCACCATCTCTCCAGCAAACATCTCTCTCAGGAAGAGGCAAATGCAGCCTTGTAAGGTTGTCTTGAAGGAAGTTGTAGAACAGAAAGCTGTGGCCTTGCCGGACAGCCCAAGCCCGGGCCCCGCAGCAATCCCAGAGTCACCCGTGTCAAGCCCCGGCGAACACAAGCACCACAACGACAATGACTCGAGTTGTGACAGTGCACCCTCTAGTGTTAAAGTGGAGCAGTCGACGGTGGACAGGAAGCCATCAACCAGTGACAACTATAAGGATGTACCACAGGGTTTCCTCTCATCAAGGGTGGATGAACCACTTCGGGTGTCTAAGTACATCAAAGAAGACGGGACTCCGTGTAACCTAATGGTCACTATAGCTGCGTCTCTGGTGGTCAGCAGAAGGAACAACCGGCCAAGAGTGGACACAGACTTCAACATGTGGAAGGGGAAACATGTTAGGAACTTCAAGAAATTCAGGAAGGTGCGTCAGGTGGGAGCGTCCGGCTTGCCACGGATCATTGGCCGGAGTGACTTGGAGGTGCACAGGAACAGTGACCAGAGAGAGGTGGAAGACGTCTTCATGCACGAGATACACGCGGAGAGTCAACAAGAAGACTCAAACAAACTGGCAGATGAACTGTTTGAATGGCAGCCACGCAAAAGGAAGGGGAGGTAA

Transcript

OALVG00000035556.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498	FHA	FHA domain	Family	Interproscan
PF08599	Nbs1_C	DNA damage repair protein Nbs1	Family	Interproscan
PF16508	NIBRIN_BRCT_II	Second BRCT domain on Nijmegen syndrome breakage protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000253	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR013908	Domain	Nibrin, C-terminal	Interproscan
IPR032429	Domain	Nibrin, second BRCT domain	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR040227	Family	Nibrin-related	Interproscan
IPR043014	Homologous_superfamily	Nibrin, second BRCT domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12162	NIBRIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0007095	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0030870	Cellular Component	Mre11 complex	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-