Gene detail

Detailed information of OALVG00000035102.1 in Oasisia alvinae Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OALVG00000035102.1	COLLAGEN ALPHA	tig00090448	5795121	5817595	+

Gene Structure

More details in Jbrowse Sequence

CDS

OALVG00000035102.1

ATGTTCCTCTTGCCACTTCCAGCCGTCCTGTCCATGGCCGTGACGACAGCTGCGGCTGACGGTCAATGGGGAAACTGGACGGGGTGTAGCAGGTCTTGCGACGGTGGAACGCAGGACAGAGTGAAGACGTGTACAGTTGACGGGAGATCTGTGGAGTGCGGCAACGAGACAGCGGCGTGCAACATGCAGTCTTGTGAAGATCCGTTCACTAACGCCACCTGGACCAAATGCAGTGCCAAGTGCGGGACTGGCAACAGAAGCCGACGCGGCGACGACGGAGAAGTACAATCAATCAGATGTCACACCCAGTCGTGTGTGCCAGAACACAACTGCACGACCGACGTGGTCATCGTCGTCGACTCGGCGAGCGATATTGGGGAGGCTCGTTGGCACGTCGTCAAACAATTTGTCATTGACGTCATCCTCGGTCTGAACATCAAGGCGACCGGCACGCGCGTTGGGGTCGTCGTGTTCTCGACACAAGTCAACGTCGTGTTCGGCATCGGCGAGTACGACAACCCCGGCAACATGAGCAGAGCCGTGTGGGGCGCGCCGTACATGGCCGGAGCCACGAACACGGCCGACGGCATCAGGACGATGCACGAGATGTTCTCGAAAACCGAGCGCCCGGATATTCAGCAGATCGCCATCCTGGTGGCCGCCGGCCCGTCAAACGTCGACAACGCCAGGACGGTGCTGGAGGCGACCTCAGCCAAGGACGATGATATCTACATGATTGTTCTAGGAATGGACGGCTACGACAATCACACCGAGGCATTGTCAATCGCCAGTGAGTCGGACGGCGTCATTGCATTCAACACCAGCAACAACGGCAACGCGAACAACATGACAAATCTCATTGTCAACTTGATATGTAGAATATCTGTCCTGCGGCAGTGTGACGTGTGTGAGTGGTCAGACTGTAGCGAGTCGTGCGGCACCACAGGAACAAGGACGGGCCGAAGGACGTGCTGGTACATTGACCCTGATACCCTACTCGAGAAAAATGGATCGCGCATTGAAAATGTCACATGTCCATCCGAAGACTGTTACATACCGTGTCCGACGTCCACTACTATTGACACAACGACAATGATTCAAACAGGAACATCAGCAATGATAACAGACGAAACAGTGTCTTCAACAACCAAGTCCACTACCACCTCTCATCCAAAAACAGTGTCTTCAACAACCAAGTCCACTACTACCGCTCATCCAAAAACAGTGTCTTCAACAACCAAGTCCACTACCACCGCTCACCCAACAACAGTGTCTTCAACAACTCAGCTTAAATGGCAGGTTGATTGCTTCCGGTGCGACATGGCGATGGGTCAAATATGGCGACCCGATCCCTTCAACTGTCACATGTTTTACATCTGTGAGCTACTGCCCGGTGCCAAATACCGGGTACATCACGTGACGTGCGGAAGTCTCTTCTGGGACCAATCAAAGCGGGCCTGTATGGGCGTGAAGACGGGGGACTGTGTCGTCAGTGACGTCACCACGCGCACAACTGCCCCAGCAGTCGCAACTTCTAAAGCACCTTGCCCGCTGAGTCCATATCCTGGAGACGCGCGCAAGTTCTGGACCGACGGAGACCCAACCAGCGTGCAGCGGTGCGTGGAAGGGATGGAGTTTACGAATGCTGGCGAACTCTGTGACTGCATTTTCGTGAACAGCCCTGGGCATCAAAGCTGTTCCGGTGATCTTCTCCTCCATTTACCCTTTGATCACAATTTCAACGACGTCACATGTAACAAGGCTGCCGCCACACGATACGGGAAGGGTGTGTCCATTGTCAACGACCAAAACAGAGGACATGTCGCCTTCTTCGACGGTAGCGGTTACTTGGAGGTTTCGTTCATGCGATCATGGTTCGCGTCCAATAACATCGACAAGTTCACCATCACTCTCTGGTTCAAGTTGACGGCCAACACCGTCAAGAGAGGCGCCATCATCAACAACGGCGACTGTTTCAGCTCGTCTAACGTTCAACTGACTGTCAACGATGACACCATCTTTGCCGGAATCGCGACTGACGACAGCGGAGTGGTGGTCACCTCGGCCCAAAAGGTGAACGTGAATCAGTGGTACGCAGCCAAGTGGCTGTATGACGGGTCCATGCTCAAGTTCTATCTGGATGGACAACTCGTGAAATCGGCCAATGCCCGAGGTTTCATGTCTGACACAGACGTGCCAATGCACATTGGAGCCGTCTGTGGCGTCGACCATTTCGTTGGTTACATCGACGACGTGCGTGTGTACAAGGGAATTGTGAGATGA

Transcript

OALVG00000035102.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR006558	Domain	LamG-like jellyroll fold	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR036508	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR050525	Family	Extracellular Matrix Assembly and Organization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24020	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008061	Molecular Function	chitin binding	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-