Gene detail

Detailed information of OALVG00000034442.1 in Oasisia alvinae Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OALVG00000034442.1	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	tig00090242	145446	272060	+

Gene Structure

More details in Jbrowse Sequence

CDS

OALVG00000034442.1

ATGTTAAAAGACTTCTGTCCGCTGGCGAATGCCGAGACTGACTTCTGCGGAGACAACCCATGCGAACATGACGGGACATGTACTAATGAAGAGACGAAGTATACTTGCGTATGCATTACAGGATACACCGGTGTCAACTGTGAAACAAACGTAGATGAATGCGATTCCAACCCATGCCAGAATGCCGGGACGTGTTCTGATGGAGATACCTCTTATACTTGCGAATGCGCTTCTGGATTCTTGGGAGGCACCTGTGAAAATACGGACTTCTGCGGAAGCAACCCATGCAAATATGGCGGGACATGTACTAATGAAGAGACGAAGTATTCTTGCGCATGCATTACGGGATACGAGGGTGACAACTGTGAAACAAACATAGATGAATGCAATCCGAACCCATGCGAGAATGCCGGGACGTGTATTGATGGAGTGAACGAGCATACATGCAGTTGCACTACTGGATTCTTGGGAGTCAACTGTGAATATACGGACTTCTGCGGAAGCAACCCATGCAAATATGGCGGGACATGTACTAATGCAGAGACGAAGTATTCTTGCGCATGCATTACGGGATACGCGGGTGACAACTGTGAAACAAATATAGACGACTGCATAGGCGAACCATGCAAGAATGGTGCGACATGTATTGATGGCAAGAACACATATACTTGTACATGTGCTACAGGATACACTGGTGTCAATTGCGAAACAGATATAGACGACTGCATAGGCGAACCATGCAAGAATGGTGCGACATGTAATGATGGCAAGAACACATATACTTGTACATGTGCTACTGGATACACTGGTGTCAATTGCGAAACAGATATAGACGACTGCATAAGCGAACCATGCAAGAATTGGGGGGTATGTACTGATGGAGTCAACAAGCATACTTGCAAATGCCGACGTGGATACTCTGGAGTCGACTGTGAATTTGTCAAACTGTATCCCCTGCTGGTGGCGACGGACACAGCTATCATGAAAGTTCCGGTCGATGATTCAGGGACAACACAAGGCTACGGTGCACCTATCACACTCATCTCCGAACTTGTGAACGGGGACTCAGTTGCTATGGACATCGGTCGTGTTCACATCTACTGGAGTGGCAACGTCAACCACACCATCAATCGGGCTGCATTTAACGGTTCCAAACCAGAAGTCGTAATAGGTTATGTCGGATGCCTTGAAGATGGCGCACCTCGCGTCTTGCACGTACAATTGCAGGGAATGTCCACGTATAATACTCCAGAAAGATGCGTGAAAGCGTGTTTAGAAAAAGGACACCCGGTGGCCGGTCTGGAAGACGGCGCACACTGTTATTGTGGGTCGACGTACGCCACTTTGACGAGGAAAGACGAACAAGACTGCTCCAAGAAATGTCCAGGAGACAATAGTAAAAGATGTGGGGGCTCCAATGTGTTAAGTGTGTACAAAGGATACATCGATGAAGAAGTACGTCGACTAGCGGTAGACGCATCGGCGGGCAAGTTATATTTCACAACTAAATCCGTAGTTGAAGTAATCAACTTGGACGGCTCAGACAGGAAAACACTTATCACGCACGCAAAGGGTGTTATGACGTACGAGGTCGCCGTACGTGTTTCAGAAAGATTGCTGTTCCACACCACGCAGAACCCGGCTGCTATTTACCAATCCAACCTGAATGGCGATGACCGTGAAAACGTTCTGAAGCAAACTTACCCGAGTTACGGGGCGCCCGTGGGTATAGCCATTCACGATTATGGCTATTTGAGTGGGACTTTAGTGGCGTATTCAGATAAGACGGGAATATTCCGCGTAAAGGACGGAGAGGTAAAGCACAATTATGATACTGCTGGCCGCGTCAGTCACTTCAACATAGAAAATGACGCGATGTACTACTTGCTGGACACCACCCCAGAAAGTGTGACCTTATGTTCAATGATAACACTAACGTGCGACGACATCAGCATCGATAGGACAGTGAGAGGATTGACGGTGTTGCGTACAGACTGCATGAGCAACCCATGCAATTATGACGGAACATGTACTAATGGATTGAACGGCTATACTTGTATATGCACTGGAGGATACACGGGTGGCAATTGTGAAATAAACGTTGACGAGTGCAGCAGCTATCCATGCAGTAATGGTGCGACATGTAATGATGGAATTAACTCATACATTTGCAAATGCGCTACAGGATATACGGGTATCAATTGCAAAACAGACATTGATGACTGCAGAGAGTTACCATGCAAGAATGCAGGGACATGTATTGATGGACACAACAAGTATACATGCAAATGCCATACTGGATACTCTGGAGACGACTGTGAAATTGTCAAACTGTATCCCCTGCTGGTGGCGACGGACACAGCTATCATGAAAGTTCCGGTCGATGATTCAGGGACAAAACCAGTCTACGGTAACGCTATCACAGTCATCCCCGACCTTGTTAACGGGAACTCAGTTGTTATGGACATCGGTCGTGGTCACGTCTACTGGAATGGCAACGTCTCCCCAACAACCATCAATCGGGCTGCACTTGACGGTTTCAAACCAGAAGTCGTAATAGGTTATGTCGGATGCTTTAGCGACGTCGTACCTCCCGTCTTCAATGGTACATTGATGAGCAAGTTTATGACTCCAAAACTTTGTATGGAAGTGTGTTTACGAAACGGACACCCGATGGCCGGTCTGTTAAACGGCCCATTCTGTTATTGTGGATCGACGTACGCCACGTTGACGAGGAAACACGTTCAAGACTGCTCCAAGCCATGTCCTGGAGACGACAGTAAAATGTGTGGGTCATTCAAATTGTTAAGTGTGTACAAAGGATACATAGATGGAGCAGTACGTGGACTGGCGGTAGACGCATCGGCGGGCAAGTTATATTTCACAACACAATCCGTAGTTGAAGTAATAAACTTGGACGGCTCCGACAGGAAAACAGTGATAAAGTACTCTAATACTGAAACGAAAACGTACGGTGTCGCCGTACATGTTTCAAAGAGACTGCTGTTCCACGCCACGCAGAACCCGCCTGGTATCTTCAGATCCCAACTCAATGGCACTGACCCTGTAAACATTGTGACGGCTATCGGAGAACGGTATATCAATGCGATAGCCGTTTACTATAGTGACGATAGGATTGTGTCGGCGGATTCAGGTAACAACAAAATATGCAGCGTACCATGTCAAGGCGGAGAGATGCTCGTGAACTACGTACGTGATAGCTGCATCAGTCACATCAAGGTGGAAAACGACATTACGTACTTCTTGCAGGACAACACCCCAAACCGTGTGCGCGCCTGTCGATTGGGACCACCGAACTGCGTCGACCACGACATCAAAGCTGGGGCATTGAGAGGCATCGTGGTGTGGCGTACAGACTGCAAGAGCAACCCATGCATTAATGACGGGACATGTACCGATGGAGTGAACGGCTATACATGCATATGCACTGGAGGATACACGGGTGGCAATTGTGAAACAAACGTTGACGAGTGCAACAGCAATCCATGCAGTAATGGTGCGACATGTAGTGATGGAATTAACACATACATTTGCAACTGCGCTACTGGATATACGGGTGTTAATTGCAAAACAGACATCGATGAGTGCAAAGACAGCCCATGCCAGAATGGCGGGACATGTATTGATGGAGTGGACATATATACTTGCAAATGCCCTAATGGATACACAGATAACAATTGCGATACAAATATAGACGACTGCGAAAGCAAACCATGCATGAATGACGGGACTTGTGCTGATGGACTGAACAAGTATACTTGTAAATGCGCGACTGGTTACATGGGAGTCAATTGTGAAGGGTATATTTTCGTCCGCCAATTCGGAGATGAAATAGAGAAACCCAGCAAGGAAGAATTCAGCTACCCAGTCAAATTCACGATGCCCAATGAGAAATACAACAAACAATTAGCAGACGTGTCCAGCTCCCAGCACAAGGCGCTGTTCAATAAGCTCGAAATAAACATGCGGGCTTCGGTAAAAGATAGTCGAGTCTACATCAGTTCAATACTGAACATGACATTCCGGGCTGGCAGTGTCCAAGCTGACTTCGTTGTTGTCACCAAAGAGTCACACACGCCCAAAGAAGTGGAAGATCACGTGGTGGCTCTCGCAACGTCCGGCTCTCTCAGTGGATTGGTTGATCCAACCACAGTTACAGTAAATGACACTGACGACTGCAAAAGCAACCCATGCAAGAATGGTGGGTCATGTACAGATAATGTGATGGACTACACCTGCAAATGCACTACTGGATACAAGGGTGTCAATTGCGAAATAAATCGTGCGTCGGTTCCCAGCAAGAAAGGCCGTGGTGAAAAAACGGTCATACATCTAAAGAAGAAGCAGACATACAGCGAGTCGATGAGGGTGGTACTCGTTATTGTCTGTCTGGTGCTTACCATCGTGTTTATTGCACTGGTCGTAGTCGTTGCTATCAAGGTCAAACACGCTATCGTCATCCATCCCGTGCCAATGCCCGTTAACGCCTAG

Transcript

OALVG00000034442.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF01390	SEA	SEA domain	Family	Interproscan
PF01822	WSC	WSC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR000082	Domain	SEA domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002889	Domain	Carbohydrate-binding WSC	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12916	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005112	Molecular Function	Notch binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-