| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| OALVG00000033341.1 | COLLAGEN ALPHA | tig00090100 | 616111 | 638103 | - |
| CDS | |||||
| OALVG00000033341.1 | |||||
| Transcript |
| OALVG00000033341.1 |
| Protein |
| OALVG00000033341.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00028 | Cadherin | Cadherin domain | Domain | Interproscan |
| PF00051 | Kringle | Kringle domain | Domain | Interproscan |
| PF00092 | VWA | von Willebrand factor type A domain | Domain | Interproscan |
| PF00754 | F5_F8_type_C | F5/8 type C domain | Domain | Interproscan |
| PF13229 | Beta_helix | Right handed beta helix region | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000001 | Domain | Kringle | Interproscan |
| IPR000421 | Domain | Coagulation factor 5/8 C-terminal domain | Interproscan |
| IPR000742 | Domain | EGF-like domain | Interproscan |
| IPR002035 | Domain | von Willebrand factor, type A | Interproscan |
| IPR002049 | Domain | Laminin-type EGF domain | Interproscan |
| IPR002126 | Domain | Cadherin-like | Interproscan |
| IPR006626 | Repeat | Parallel beta-helix repeat | Interproscan |
| IPR008979 | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| IPR011050 | Homologous_superfamily | Pectin lyase fold/virulence factor | Interproscan |
| IPR012334 | Homologous_superfamily | Pectin lyase fold | Interproscan |
| IPR013806 | Homologous_superfamily | Kringle-like fold | Interproscan |
| IPR015919 | Homologous_superfamily | Cadherin-like superfamily | Interproscan |
| IPR036465 | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR038178 | Homologous_superfamily | Kringle superfamily | Interproscan |
| IPR039448 | Domain | Right handed beta helix domain | Interproscan |
| IPR050525 | Family | Extracellular Matrix Assembly and Organization | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24020 | COLLAGEN ALPHA | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding | Interproscan |
| GO:0007156 | Biological Process | homophilic cell adhesion via plasma membrane adhesion molecules | Interproscan |
| GO:0016020 | Cellular Component | membrane | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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