Gene detail

Detailed information of MBSQW58_g1159 in Bathyacmaea lactea Gene info

Gene ID	Annotation	Contig	Start	End	Strand
MBSQW58_g1159	30S 40S RIBOSOMAL PROTEIN	ctg78	1932444	1935571	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

MBSQW58_g1159

ATGGGAAGAGTCCCCAGAGTTCAGAGTAAAACGTATGCAACTCCCCGTCGTCCTTTTGAAAAGGAACGATTGGATCAGGAGTTAAAAATTATTGGTGAATATGGTCTGAGAAACAAAAGAGAAGTATGGCGTGTTAAATACACATTGGGTAAAATTAGAAAAGCTGCCCGAGAATTGTTGACACTAGAAGAAAAGGCGCCAAAGCGACTTTTTGAAGGTACAAGTTTGGATTACATTTGCTAATGGGATGCTTTTAAATTATATATTGTGATTATTCTTACTTGTTCTAtgtaaatcaaaataaaaggtgatgttgatgctgattatgcaaaattcccttgtattgtacacccaataaaaatgttcagaatcatgcgAGGTGTTGTGTGAGAAGACAGctgagatagtcgactaagctatctgctttgcctgtctgatgcagcTTATGTTTTCGTGGCATCTTCAGCAAATCTAGCAAGAGAGGTCCCTCTACTCTTGGAACCATCTCATGTCTTATTGCAAGCCCTGTCCATTATTTTACAGACTCTTGGATTAGTCCTTCATAGTAACTTTCTTTCCCAGGTAACGCTCTGTTGAGACGTTTAATCCGAATTGGTGTACTTGATGAATCTAAAATGAAGCTGGATTACGTTCTGGGTCTCCGACTTGAAGATTTCTTGGAAAGAAGACTTCAAACACAAGTTTTCAAACTTGGTCTCGCTAAAAGTATTCATCATGCCCGTGTCCTGATCAGACAGAGACATATTCGGTAAGTAGATTGTATGACCTAATAGTAATAATCACTTGCTACTATAGTGGCTGTCAGATTTTCTTGCAGTTTCCACATTTAGAAGATGCAGATGGAGTCATTCAAGGCACAAAATTGCTGCCTATATGTGACCAAACAAATAGAGTTTTTCAAATGATTTATCTGCGTTTTTACAATGTTGCTTTTTGAGCTGTACTTTTAACCACTTGGAGGTGGATGACGagagatctcgtgagacattttcttgccgcaccacggatgacgaaataaccatttttttctggcggcgaaaaccattaatttagaatacctagtatttctagcatgcactgatatgtttattctaactgtcactactgaatgccaagaatggatgtggaatccctccgtactgatttttaatgacgtcgatcaagtagggaattccaaaactgcaggtaaactatccacagtttggcaagaaaatgtctcgcaggatatctcGTCATCCACATCCAAGTGGTTAATTAACAAAGACAATTTAAAAATTGCTGTGAAATGGCGAATAATTGCTGTGGTATTGTTTACCTATTTGTGCAGGGTCATATATTTGGTTCCAAAGTTTAACATTTTCTAAAATTGCCGTGTACATACTCTGGATATAATACATCTGATTGTTTCCATTATTTATTTAAAATGGTTTGTATGTGTAATATGTAAAGTTTATTTTCTTCAGCCAGGAACAAATAATAAACACACTGTAGTCCACTTGAGTAAACAAGCTCAATGACTATGAGTTACTGGTATTTGAGGTTGGAATATGAAGCAGTTCCCTCCTGATCCAATGTGACACTTGATCAGGATTTGTGGATTCCTTCCAAGTCGACCATTTATAAGTAATGGGCCACTTTGACAAAATGTCATATGTCCATGTGTAGTAATATTGGTTGTAAAAGGTTTATCTTGAGGTATGTTTGTAAGAAGCATATTGAAGTATACTTGTAATGTCAATAGGTTGGATTATAAAAAATAGCAAAGCCTGCAGAAATGAAAGTCTAGTAATGTTCCTGTTCTGCATTGTATACAAAAAAATGTTGGTCTTTACAAAGATTCATTTCAAATCACTGAAATTATCAACTGAACATTGTTTTGCTTGTAAGATTATTTTTTTTGAATCCAGACCTGTTGAATATATTTTAAGCAGGTCTTATCCTGGCCAGAAATGACTAGATTGTTTAAAATAAATTTTTATTGAATTAAAATCAATTGCAATTCCCTTGCTACATTCCATAGGAACTCGACATAATGTTATTCAGAAAATCTGACTAATGAAGTTGCAAATCTTTGTAAAATTGTCAGGTAGTGTGGATAATAATTATATAGGTTATTAAAACAAACATGTAAATAGATGAAACCGAAACTAGTATTGCCCTCTGGATGCTCAACAATCTGAATGGTAATTATTATTGGGGAAATTATCATTCATCATTTATTAATCTGTTCTATGTTTCAGAGTTCGTAAACAAGTTGTCAATATCCCATCTTACGTTGTACGATTAGATTCACAGAAACACATAGATTTCTCACTAAGATCACCCTATGGAGGTGGCCGACCAGGTAGGGTGTTTATCATTAATTTGAACATGCAAGATGAAGTAACACAATCGATATTGATTCTGGATATTTCATTTAGTTCATTATGTTTTCATCAGATTGCAAATGAATGATGTTGAAGACCCGGTTCTGTGGAACCATGATTGGAACAAGTATTTATTCATGCCATCATCCcagtggcgtgcagaggtctgctgatgcccggggccaactcgcccccacacacacacacacacacacacacacacacactcactttcaagactcgagtgcaaagcctagtaatgagaaatattatgagaaaggaaaacattttgaatatgtaaacacagatttttttaagggagcttgtagtattccacaaggcaattttattgacaaattagctgagcaatatcactaaattacaagtagccaccaatacagtacaaaactggccaattgatttccaagtacacataaacacatatcgccacacataaatagatgtagccatgtgcatatatttccctctctgattggatgaccccccccTCCTTGGATGCCTGGGACCGTCGCCCCCCTCTACATCAGACCTGTGTCTACTTGAAAAAAAAAGTCCAAAATGCAGAAATTTACATTTTGAGAGTACATCAACCCAATGTTTTGAAATCTAAATAATATTAAAAGCTTGGAATATATCTTGTTTATTTCAGGTCGTGTAAAGAGACAGAATCTGAAGAAGGCTGATGCTAAGGGAGGTGATGCTGAGGAAGAGGAGGATTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00163	Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain	Family	Interproscan
PF01479	S4	S4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001912	Domain	Small ribosomal subunit protein uS4, N-terminal	Interproscan
IPR002942	Domain	RNA-binding S4 domain	Interproscan
IPR005710	Family	Small ribosomal subunit protein uS4, eukaryotic/archaeal	Interproscan
IPR018079	Conserved_site	Small ribosomal subunit protein uS4, conserved site	Interproscan
IPR022801	Family	Small ribosomal subunit protein uS4	Interproscan
IPR036986	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11831	30S 40S RIBOSOMAL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0015935	Cellular Component	small ribosomal subunit	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0042274	Biological Process	ribosomal small subunit biogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-