| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Lsat_s108.g0024.t1 | MRNA EDITING ENZYME | Lsat_scaffold108 | 344627 | 346339 | + |
| CDS | |||||
| Lsat_s108.g0024.t1 | |||||
| Transcript |
| Lsat_s108.g0024.t1 |
| Protein |
| Lsat_s108.g0024.t1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18750 | SNAD4 | Secreted Novel AID/APOBEC-like Deaminase 4 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002125 | Domain | Cytidine and deoxycytidylate deaminase domain | Interproscan |
| IPR016192 | Binding_site | APOBEC/CMP deaminase, zinc-binding | Interproscan |
| IPR016193 | Homologous_superfamily | Cytidine deaminase-like | Interproscan |
| IPR050610 | Family | APOBEC Cytidine Deaminase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13857 | MRNA EDITING ENZYME | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0004126 | Molecular Function | cytidine deaminase activity | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0016554 | Biological Process | cytidine to uridine editing | Interproscan |
| GO:0016787 | Molecular Function | hydrolase activity | Interproscan |
| GO:0080111 | Biological Process | obsolete DNA demethylation | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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