Gene detail

Detailed information of Lsat_s089.g0054.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s089.g0054.t1	ODD-SKIPPED - RELATED	Lsat_scaffold089	1623237	1631305	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s089.g0054.t1

GCAATCGTTGAATCACATGAGAGAGAGTGGGGTATTGTGTGACATAATCATACAGTCATGTGACGGTCAAGAGTTTCTCGCCCATGGTTGTGTACTAGCCGCAGCAAGTCCCATTCTGAAGGCGGCCATCAACAACACCTTTGGTCAGCTGTCCACTCTGAGGATGGACTGGCTGTCCGGGGCCGTCCTAGAGACACTGCTCAACTTTATATACACAGGAGAGTTGAAGGTGTATTCGGGCGACACGGAGATGGTCAGTGACTTCTTCTATGCTGTTGGTCAGTTGGAGATGACCGGTGTCCTAGTCAGCTGTCCGGACGGAGGATTAACAGATGATGTAAAGAAATGTGCAAGTGGAATGCAGGCTGGTACACATTGTGATGCTGGTGCATCAGACAAGGCTACAAGCACCACAGCTGAGAGACACATCACAAGCAATGTGACTAAACACACTTCTGCTTCTGCTATCAAGGCTGAACTTGCTTCTGCCAACAAAACTGAAATTTCTTCTGCCAGCAAAACTGAAGTTTCTTCTACAAACAAACCTGAAGTTTATTCTGCCAAAAAAACAGAAATTTATTCTGCCAACAAAGCTGGAGTTGCTTCCACAAGCAAGCTTCCACCTGAATCAACCAAGTCGGGCGAGTGTGGGGCTGATCACAGTTATGCTGATGCAAACTCTGAGACATGTGCAGACCTGTCAGTGTCTGAGATGTCTAGCAGACTGTGTCATTCTTCAAAGTCGAGAAGAAAGACCCGAATGTGGGGTTGTCCATCACCAATGATGGTACATCGCAAGAGCTTCCTACCGCGGGCGTTCTCCCTCAAATGTCCCATATGTAGGATTTCATTCAGCGATTCGATGAAGTTGGCTAATCATCGACTGCACGATGCCCCGGTGAGAGTGTTCCGTGCGTGGCAGGATGGACTTGACCAGTCGCAGGACATCACAGAGTTGGAGACTGACCCACCAGAGGACGAGGCTGACCACTCCACAACAAGTGAGACTGACGCTGTGAAGACAGAATTCAAGGTGGAAGCTACGCCCGCGTCAAAAGATGGGTTCTTGTGTACAGAGTGTGGCAAGGAGTTTGAGAAGAAGAGCCAGTTGAAGACTCACTCCAAGACCCACGTGATGCCCCTCACATGTCCGGTGTGTGCGCGACCGTGCAAGTCACGCTCGAAGCTGCGGCGCCACCAGCTAACACACACCAAAGAGAAACCATACTTTTGCAAAGAGTGCGGCAAGTCGTTCCAGCTGAACGAGTCCCTGGTCATTCACAGTCGCCTGCACACCGGGGAGCGTCCCTTCAAGTGTTGCATATGTAACCAGGGTTTCCGGGACAAGAGCGTAATGCGCAACCACGAGCTGAAGCACACGGGAGCGAAACCGTTCCAGTGTGCGCAGTGTGGCCGGCAGTATGGCAGTCGCAATGCCCTGTCCCGCCACCGCAATGTTCACACCTTAGAGCGATGCTACCGGTGTGAACACTGTGCCCGTGTGTTCTACCAACTCTCCGGACTCATGTGTCATCGTCGCACGCACACTGGAGAGAAGCCGTACATGTGTTCTATATGCGCACGTGCGTTTGGGGACCGTTCCAGCATGCGCCGACACGAGCGTGTGCACACAGGCGAGCGGCCGTATGCGTGCCCCACGTGTAACAAGACGTTCACGCAGTCGTCGTCGTTGAAGAGCCATCAGAAGACTCACATTAAACCGGACTGCGCCAAGATTATCTGTGTTGAGATGCATCCCACACAAGGCGTGTCACAGCTACCATAGAGCCAGTGTCATCACGCAGTATAGTGTGACTGTCATAGTGTCATATGTTGCAGGTGGTGGTGTCAGATGTGCAGTGTTAAACACCTGCCTGCACATGTATATAGCATTGAACAAACATGCAGGTGGTGGTTGAAATGTTGAACAATGTACATTATTGTTGTTCTTGAGGAATGTATATATCTGTATTGTCAGCAAGAAAAAACATTGTTCCATTATGGTAACTGAATCTGTTTATTTAAAAAGGAAATTTTGTTGTGCTTTTTTAAAGTTTTTTGTAAGATATGTTGAACACTGTTGTAATCCCGTCAGTAACAGTTTTCATAAGGCCCAGATACTGTTATGTGGG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|BTB
Transcription Factors Family	ZBTB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00651	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050717	Family	C2H2-type Zinc-Finger Transcription Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14196	ODD-SKIPPED - RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001655	Biological Process	urogenital system development	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009790	Biological Process	embryo development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-