Gene detail

Detailed information of Lsat_s044.g0018.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s044.g0018.t1	PROTEIN CBG26694	Lsat_scaffold044	815840	843944	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s044.g0018.t1

CTTCTACATTGCTAAGTCAGAAGGACCTGCTATTCTTGAACTGGCTAGCTGCAAACTGATGAACGTTGTAACACTGCTGTGCGATGGCATAGGCATGCAAGTGTCTGCCGTCAACAGAAGTGCAGAATGCAGGTCGAACAAGATTCGCATCGTCGAAGATCTGAAGAGTGCGTTCCCTCGGTCCTTTGACGCACTCGGAAACTTCAAAGAGGAATACCACCTCACTGTAGACCCTGCAATCGCGCCAAAGTCGCGAAGCGATACAGAACGAACTGAAGAAGATGGATGCGATGGGCAGAAAGAGCCTTTGCTGCAAAAGGACGTACCGCCGTATCCATGGCACACACTGAGCGCAGACTTCTTCGAGCTGGAAGGAGAAGAGTACTTACTGGTAGTGGACCACTACAGCAAATTTCCATTCGTGAGAGCCATGGGACGTTCATGCACTAGCAAGGGTGCCATCGCGTACTTCAGAAAACTGTTTGGGATTCATGGAATTTCTGAGCTGCTCTTCACGGACAACTGTCCACAGTTTGACTCGTACGCTTTCAAGCAGTTCGCCAAACAATGGTCATTCGTTCACATAACCTCTTCGCCGAGGCACGCACAGTCCAACGGTTTTGCCGAGCGCACAGTGCAGACTGTAAAGAACACAATCCGGAAAGCCAAGATGGACGAGCTTGACCCCGAATTAGCACTCTTGTGTCTTCGTACCACTCCGATCAGCGATAAAATCAGGTCGCCAAATGAGATGCTGGTGGGCAGGAAAGCCAAGGCTAATCTGCCAAAAAGCACGCGCAGTCAAGTTGTTGATTCTGAGCAGATCAATGCAGCATTACGTGATCGCCAAGTGTTACAAAAGTCGAACTATGACTCGCGAGCGGGCGTAGAGTTGCCGCAACTCTACGCTGGTCAGCACGTCCGCTTCCAGTACCAACCTAGCGGCAACTGGATGCCTGCAAGAATCGTTCGTGAAACTGACGACATGAGGTCTTACCTGCTGGAAACCTCCAACGGAAGTTTACAGCGACCGAGTCGTCACCATATCGCAGAGACACCGCCGCAGCGAGCACCGGTCGTTGAGCAACAACAGTCACCGAAGCGGGTGCGGTTCCTTGAAGATGCAGTGCCAGAACCGGCACCGCCAGATGCGATGAAAGCAAGAGAAACGACCACCGCCCCGGCAGATGCAAATAGAGACGGGTTCAGTCGCTACGGACGTCGAAAGTTGGTTCGCTCAAAAAGTGGGTTGAAGATGGTAGCGTCTAGCCAGGCGACAACTAGTCCCTTTTGTGCTGTAGAACCGCCATGGATTCCAGATAGTGAGTGCAAGTATTGCATCATTTGCCAACAAAAATTTGACATCCTCCGTAGGCGGCATCACTGTCGCCGATGTGGCCGGGTCTTCTGTAGTTCCTGCTGCAATGGTAAGATGGCGCTGCCCCGCATGTGCTTCATCGACCCCGTACGGCAGTGCGACTCATGTCTGCAGGTGACGGTGAGAGAGAACGAGTTCTTTGACAAACACCTCAAGATACTTATGACAGGTGGTCAGTTCATCCTGACAAGTTCCGTCATTGGTAGTGAAGCCACATCAATGTGTCTGTGTAAGCTAGCCACAGACAACAGGTTTCTCAAGTTTGACTTCTGCAGCAACACCACAGAATTGGAACCTGCTGAAGTAGAGACAATTCACACTTTGAATATCCTCACATCTGGATGTGATCCCCAAGTGGAGGAAGGTAACCAGGTTGCAACTAGCATTGAGCTGCATTACAGAGACGACAGCAGTGAGGACCAGCATGTCCAACTGACCGTGCCAGAAGGGGCACTCAAGAAACAGGCAATGATGTGGATAGTTGCCCTACGGAGGGGGATGAAGATAATGAAGGAGAGTGAAAGTGATGGCACATAAAGGGACAGTGACGAACTGCCAGTGCTCATACTGTCACACCCAAGTGCCTTGAAACAGTAGCTAATGAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363	FYVE	FYVE zinc finger	Domain	Interproscan
PF16696	ZFYVE21_C	Zinc finger FYVE domain-containing protein 21 C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000306	Domain	FYVE zinc finger	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455	Domain	Zinc finger, FYVE-related	Interproscan
IPR032031	Domain	Zinc finger FYVE domain-containing protein 21, C-terminal	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038632	Homologous_superfamily	Zinc finger FYVE 21, C-terminal domain superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-