Detailed information of Lsat_s017.g0038.t1 in Lamellibrachia satsuma Gene info
Gene IDAnnotationScaffoldStartEndStrand
Lsat_s017.g0038.t1ATP-DEPENDENT RNA HELICASELsat_scaffold017697278732072+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF04408HA2_NHelicase associated domain (HA2), winged-helixDomainInterproscan
PF05773RWDRWD domainDomainInterproscan
PF07717OB_NTP_bindOligonucleotide/oligosaccharide-binding (OB)-foldDomainInterproscan
PF21010HA2_CHelicase associated domain (HA2), ratchet-likeDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR006575DomainRWD domainInterproscan
IPR007502DomainHelicase-associated domainInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR011709DomainDEAD-box helicase, OB foldInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR048333DomainHelicase associated domain (HA2), winged-helix domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR18934ATP-DEPENDENT RNA HELICASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005622Cellular Componentintracellular anatomical structureInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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