Gene detail

Detailed information of Lsat_s016.g0305.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s016.g0305.t1	MICRORNA PROCESSOR COMPLEX SUBUNIT DGCR8	Lsat_scaffold016	7813616	7832410	+

Gene Structure

More details in Jbrowse Sequence

CDS

Lsat_s016.g0305.t1

ATGGAACGAACGGCGAGTGATCGCACCTACAAGATGTTTAGTGACGGGGAGTGTGACAGCTTGGAGGACGGTGAGCTTCCTGAAGAATCTTTGTCCTCGCTTGCCAATCCAAACCTGGGGACTTGCAGAAAAAGAAAGCAAGATTCCTCAGATAATGGCAACAGTATAAAGATTGTGCTCATTGGTGATTCCGCGGTGTCAAGCTTAAGTTCTGCTCATCAGTATGATTCTAGTCATGTTTGCTTAGGAAATGTCCCGGACTCGGGAAATCAGGATGATTTAAAATCAATCCATTCAGAGGGTGGGGTCAGCATGTTACCCTCACTTGGAGGTGATAATGGGAATGGTGGATTGGCAGGTGTAAAGCAACCAGAACATGCAAACTCTGTTAACACATCCTCATTAAGCGGGGAAGATTCTAGTCAGGAGAATGTGATCAGGGAAGGACACAAAGATGCCTCGGAACTAAAGATAGCAGATGACAGTGGCACTTTGTGTGTTGCTGTTGACACGCAGCCATCAACGTCGGAAAAAGTGACAGAGTTTGAAATTATTGATGACATCTCTGATGATGACGTCGATGGCAATGGCTATGGTAGTGTGGAGTTTTACGATGATGACGATGACTCGATCAATGAAGAGGACATTGATGCGATGCTTGATGAGGGAATGGTTGAGTACAGGAAGCAGGGTCCCGGGTCAGCGGATGGGGCAAAGGGGGAAGTAGGAGAGGATGAGTTTGCAGCCCCAGTGGAGAAGGAAAAGGTGGTCTTGGTGGAGAAAGGTGTTGACCCTTTTGACATTTTGCCCGAGGGTTGGGTGATTGTCACTCACAACTGTGGCATGCCTGTCTACCTCCACAAGCAGTTGAGGGTATGCACCCTCTCAAAACCTTACTTCCTCGGCCCTGGCAGTGCTAGGAAACATGACATTCCTCTGAGCACCATTCCGTGTCTGGCGTATCAAAGAGCCTTGGAGATGGAATCTGGTAGAACAGCCTGCGGGTCAGTATGTGAAGAAACAGCCAATGGTGAGGCAGGTGAAGGTCAGAAGGTCAACAACGAAGCAGAAGAACAGACAACAACAGGGACCGTACCAAAAGTGAAAGTGGAGTCTGTCGAGGAACACAAGAAGCAAAGTTGTCTCAATCCACTCGAGGTGAGGAAATACTGTGAACAGCTGTTCAGATTCAGAACCATCAAAGTGAAAAGATTCAAAAATTGGAAAGACCGGAGGAAATACACAAGTTTGCAGAAAAAAGCCGCCCGTCCTCTCCTGCCATCAGCCACTAAACTCATCACTTGTGCCATTCCTTCAGACCAGAGCGCTGACAAACCCAACAAAAAGAAGGAATTCATTCTGAATCCAGTCGGCAAGTCAGATGTGTGCATTCTGCACGAATACGTGCAGCATGCAATGAGAGTGCAGCCATGCTACATCTTCAAGGAACTTGATGAGGCACAAGCACCTTATAGTGCGACCGTTGTCATCAACAAGGTGGAGTATGGCACTGGTTATGCAAGCAGCAAGAAGGCGGCCAAGAGTGAAGCAGCTCGCATCACCCTGGGAATTCTCATCCCTGAGATCCACAAAGTGAAGGGAGAGGAGAAGAAGGCCGACTGCCACGACGTCTCTTTCTTTGATGAAGTGAAGATCGAGGATCCTCGTATCTCAGAATTAAGTGCCAAGGCTGGTCAGCCTGGACCTTTCCAAGTCCTCTACGAATGTCTCAAGAGGAACTATGGTCTGGGAGACACAGAGATTCACATGGAGATGAAAATGCTGAAACATCAGAAGAGTGAGTTCCTCATGAGAGTCGGCAAGCACGAGGCTAAGGTGATTTGCAAGAACAAACGCGACGGCAAGCAACAGGCTGCTCAGGCCATTCTGCAGAAGCTGCATCCTTACGTCAAGAGTTGGGGCTCCCTGCTGCGTCTCTACGGCACGAAGACTCTCAAGGAAAAGAAGGCCGAGCAGGACTTTGGGTCGCTACAAACCAAAGTGAAACTGCACCATCCCAACTATAAGATCCTCCACAAACTGAGAGAAGAAATGTGTAAGATACACAGTCACAAGGAAGTTGTCAAGTCTAACATGAAAGGAAAGTTAGAATTGGGGAGCACAGATCTGGCATGTTTCACCGATCCAGCTAGCCTCAATCTGTGA

Transcript

Lsat_s016.g0305.t1

CAATTTAGTTTGATGCCGAGACAATTCAGCTAGTCGATTGTTTAGTCACGGTCCGAGAGCAAACGCAGACTGTTTGGCACAGTCGATAGCAATGGTTTGCTCTTCTACGGTGGTGAAACAATTGGCTGATAGAATGACGCTGGCAAAACATCAGTATTGATGGAACGAACGGCGAGTGATCGCACCTACAAGATGTTTAGTGACGGGGAGTGTGACAGCTTGGAGGACGGTGAGCTTCCTGAAGAATCTTTGTCCTCGCTTGCCAATCCAAACCTGGGGACTTGCAGAAAAAGAAAGCAAGATTCCTCAGATAATGGCAACAGTATAAAGATTGTGCTCATTGGTGATTCCGCGGTGTCAAGCTTAAGTTCTGCTCATCAGTATGATTCTAGTCATGTTTGCTTAGGAAATGTCCCGGACTCGGGAAATCAGGATGATTTAAAATCAATCCATTCAGAGGGTGGGGTCAGCATGTTACCCTCACTTGGAGGTGATAATGGGAATGGTGGATTGGCAGGTGTAAAGCAACCAGAACATGCAAACTCTGTTAACACATCCTCATTAAGCGGGGAAGATTCTAGTCAGGAGAATGTGATCAGGGAAGGACACAAAGATGCCTCGGAACTAAAGATAGCAGATGACAGTGGCACTTTGTGTGTTGCTGTTGACACGCAGCCATCAACGTCGGAAAAAGTGACAGAGTTTGAAATTATTGATGACATCTCTGATGATGACGTCGATGGCAATGGCTATGGTAGTGTGGAGTTTTACGATGATGACGATGACTCGATCAATGAAGAGGACATTGATGCGATGCTTGATGAGGGAATGGTTGAGTACAGGAAGCAGGGTCCCGGGTCAGCGGATGGGGCAAAGGGGGAAGTAGGAGAGGATGAGTTTGCAGCCCCAGTGGAGAAGGAAAAGGTGGTCTTGGTGGAGAAAGGTGTTGACCCTTTTGACATTTTGCCCGAGGGTTGGGTGATTGTCACTCACAACTGTGGCATGCCTGTCTACCTCCACAAGCAGTTGAGGGTATGCACCCTCTCAAAACCTTACTTCCTCGGCCCTGGCAGTGCTAGGAAACATGACATTCCTCTGAGCACCATTCCGTGTCTGGCGTATCAAAGAGCCTTGGAGATGGAATCTGGTAGAACAGCCTGCGGGTCAGTATGTGAAGAAACAGCCAATGGTGAGGCAGGTGAAGGTCAGAAGGTCAACAACGAAGCAGAAGAACAGACAACAACAGGGACCGTACCAAAAGTGAAAGTGGAGTCTGTCGAGGAACACAAGAAGCAAAGTTGTCTCAATCCACTCGAGGTGAGGAAATACTGTGAACAGCTGTTCAGATTCAGAACCATCAAAGTGAAAAGATTCAAAAATTGGAAAGACCGGAGGAAATACACAAGTTTGCAGAAAAAAGCCGCCCGTCCTCTCCTGCCATCAGCCACTAAACTCATCACTTGTGCCATTCCTTCAGACCAGAGCGCTGACAAACCCAACAAAAAGAAGGAATTCATTCTGAATCCAGTCGGCAAGTCAGATGTGTGCATTCTGCACGAATACGTGCAGCATGCAATGAGAGTGCAGCCATGCTACATCTTCAAGGAACTTGATGAGGCACAAGCACCTTATAGTGCGACCGTTGTCATCAACAAGGTGGAGTATGGCACTGGTTATGCAAGCAGCAAGAAGGCGGCCAAGAGTGAAGCAGCTCGCATCACCCTGGGAATTCTCATCCCTGAGATCCACAAAGTGAAGGGAGAGGAGAAGAAGGCCGACTGCCACGACGTCTCTTTCTTTGATGAAGTGAAGATCGAGGATCCTCGTATCTCAGAATTAAGTGCCAAGGCTGGTCAGCCTGGACCTTTCCAAGTCCTCTACGAATGTCTCAAGAGGAACTATGGTCTGGGAGACACAGAGATTCACATGGAGATGAAAATGCTGAAACATCAGAAGAGTGAGTTCCTCATGAGAGTCGGCAAGCACGAGGCTAAGGTGATTTGCAAGAACAAACGCGACGGCAAGCAACAGGCTGCTCAGGCCATTCTGCAGAAGCTGCATCCTTACGTCAAGAGTTGGGGCTCCCTGCTGCGTCTCTACGGCACGAAGACTCTCAAGGAAAAGAAGGCCGAGCAGGACTTTGGGTCGCTACAAACCAAAGTGAAACTGCACCATCCCAACTATAAGATCCTCCACAAACTGAGAGAAGAAATGTGTAAGATACACAGTCACAAGGAAGTTGTCAAGTCTAACATGAAAGGAAAGTTAGAATTGGGGAGCACAGATCTGGCATGTTTCACCGATCCAGCTAGCCTCAATCTGTGATTCTGCGGACCGTGTCAAAGCCTACAACGCACAAGAATTATGGGGACCGTATTAAAATACGTCATCACTGAATATGTATCTTTAGACCTTGTCCAAATTTTGCATGTCTGAAACTTAGTTTTAATTGTTGGATTTTACTGGGGCTGTGGTTTAAGAAAATTACCTGTTCAGGATTTAGCTATGCTCAAAGTATCATGAGTGTAAAACTACCTTGCCACTTGCACAATTTTTGGTATTTCTGCCATCTTGCAAAAATATGTGATAAAAATTGAATGTGTAAATTATTTCATTAATTTAGGTACCACAATAAATAAACATTTAAATTCAGACAACCATAAAAAAAATTGCTAATGATATCGGTACAGTAAAACAAATGGAATTTTAAATAAATAATTTTAGCACTAAGTATATGATCTATTATGTACAATTTTTTAATTCTTTCTCGCATAAAATTTTGTATATCAGCATCAAGCCACCAGATTTTAAAACTATAAAAAGCTTACTTTTGCTGCTGAACTCTGCATGACCTAATTATTCTTACAGTTCCTTGTACGTACAGGAGCATTAGTGTCAGCCAAACAGGTCAATGTGTAAGAGAGACAATTGATAGCACCAATCATTTGCAAGTTACAAACCTGATTTCTGACTCGGTGAAAAACAATTAATTATTTTTCATAAATCTAATATACAGTAAGTGTAGGGGAAAATAATCATGGCTTCACATACTTTGACTGGGAAGGATGTTTAATCCAGTACACGCAATAAGCAGGTGTGTGTCCTTTGTTAATTTGATTTGATGTTGTAATGATCTACTGTCTTCCTGCTTTAGTCAAATGAACTCTACTTGAAATTCGTGAATGTTGGATATTTCTGTCTTGGTGTCGGGTGCTTTTTACATTATAAATAAAGCTGTATATGATTGTAGTACATGGAAAAGTTGTCTTTTAGTAATTATAGGGCTGTAATTGCTTGGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014720	Domain	Double-stranded RNA-binding domain	Interproscan
IPR040375	Family	Microprocessor complex subunit DGCR8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13482	MICRORNA PROCESSOR COMPLEX SUBUNIT DGCR8	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0031053	Biological Process	primary miRNA processing	Interproscan
GO:0042802	Molecular Function	identical protein binding	Interproscan
GO:0070877	Cellular Component	microprocessor complex	Interproscan
GO:0070878	Molecular Function	primary miRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-