| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Lsat_s008.g0161.t1 | CADHERIN-87A | Lsat_scaffold008 | 3483845 | 3555953 | - |
| CDS | |||||
| Lsat_s008.g0161.t1 | |||||
| Transcript |
| Lsat_s008.g0161.t1 |
| Protein |
| Lsat_s008.g0161.t1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00028 | Cadherin | Cadherin domain | Domain | Interproscan |
| PF00530 | SRCR | Scavenger receptor cysteine-rich domain | Domain | Interproscan |
| PF01833 | TIG | IPT/TIG domain | Domain | Interproscan |
| PF05270 | AbfB | Alpha-L-arabinofuranosidase B (ABFB) domain | Domain | Interproscan |
| PF13229 | Beta_helix | Right handed beta helix region | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000742 | Domain | EGF-like domain | Interproscan |
| IPR001190 | Domain | SRCR domain | Interproscan |
| IPR002049 | Domain | Laminin-type EGF domain | Interproscan |
| IPR002126 | Domain | Cadherin-like | Interproscan |
| IPR002909 | Domain | IPT domain | Interproscan |
| IPR006626 | Repeat | Parallel beta-helix repeat | Interproscan |
| IPR007934 | Domain | Alpha-L-arabinofuranosidase B, arabinose-binding domain | Interproscan |
| IPR011050 | Homologous_superfamily | Pectin lyase fold/virulence factor | Interproscan |
| IPR012334 | Homologous_superfamily | Pectin lyase fold | Interproscan |
| IPR013783 | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR014756 | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR015919 | Homologous_superfamily | Cadherin-like superfamily | Interproscan |
| IPR017448 | Domain | SRCR-like domain | Interproscan |
| IPR020894 | Conserved_site | Cadherin conserved site | Interproscan |
| IPR036195 | Homologous_superfamily | Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily | Interproscan |
| IPR036772 | Homologous_superfamily | SRCR-like domain superfamily | Interproscan |
| IPR039448 | Domain | Right handed beta helix domain | Interproscan |
| IPR050174 | Family | Protocadherin/Cadherin-related Cell Adhesion | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24028 | CADHERIN-87A | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding | Interproscan |
| GO:0005886 | Cellular Component | plasma membrane | Interproscan |
| GO:0005887 | Cellular Component | plasma membrane | Interproscan |
| GO:0007155 | Biological Process | cell adhesion | Interproscan |
| GO:0007156 | Biological Process | homophilic cell adhesion via plasma membrane adhesion molecules | Interproscan |
| GO:0016020 | Cellular Component | membrane | Interproscan |
| GO:0046373 | Biological Process | L-arabinose metabolic process | Interproscan |
| GO:0046556 | Molecular Function | alpha-L-arabinofuranosidase activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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