Gene detail

Detailed information of Lsat_s004.g0653.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s004.g0653.t1	AMINOMETHYLTRANSFERASE	Lsat_scaffold004	17362270	17371578	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s004.g0653.t1

TGAATTTGTGCAGTAATAAAGTGACTGTTGCACGAGTAATTTTTCCTTGCATTAATCGAAGACTACTTGGAAAAGGACAATGTAACGTATTTTCATCAGAGGCTGGGAGCCTGAAGAAGACATGTCTGCACGACTTTCATGTGGCGAAGGGGGGCAAGATGGTGCCCTTCGCAGATTGGTCAATGCCTGTGTACTACACTGACCAGAGTCTGATTCTGTCACACATGCACACCAGAAAACATGCATCAATATTTGATGTGACGCACATGGTTCAAACGAAGGTTTATGGGGCCGACCGCATTAAGTTCATCGAGAGCCTCATTGTGGGTGACATACAGGGTCTCCATGACAACCAAGCCGCACTCACAGTATTCACTAATGACATGGGTGGAATACAAGATGACCTTATCGTCACCAAGACGTCTCTTGACTACCTGTTCGTTGTGTCCAATGCAGGCTGTGCAGAGAAAGATCTCAGTCATATGCAGACCAAGGCAGCAGAGATGAGAGACAAAGGACTGGACGTCAAAGTGGAGAAAATTGATAATGGACTTATCGCGTTACAGGGTCCTGAGATGACCCGAGTCCTGCAGCCAGCCGTGGACGTTGACCTTAGCAGCCTCACATTCATGCACAGCACCATGGCAGTGGTGTTTGGGGTGCCCAACTGCCGGGTTTCCCGCTGCGGCTACACAGGGGAGGATGGGGTGGAGATCTCGATACCAGTGGACCGAACCGTTGAGGTGGTTGAACGCCTGCTTGCCTCACCAGATGGCAGTGTGAAGCTAGCAGGTCTCGGTGCACGGGACAGTCTGCGATTGGAGGCAGGCATGTGTCTCTATGGCAACGACATTGATGAGAGGATTACTCCGGTTGAAGCAAGTCTGGCTTGGACCATAGCTAAGCGCCGTCGTGAAACTGCCGACTTTCCAGGTGCCCACATTATTCTGCAGCAGTTGAAAGACAAGCCGGCCGTGAGAAGGGTCGGCTTTTTGTCTTCTGGACCCCCTGCCAGAAGTGACACTCTCATCTTTGACGAAGGTGGAGCCACCAACATTGGCAGCGTGACGAGTGGATGTCCATCGCCCGTGCTGAAAAAGAACATCTCCATGGGTTACGTTACACGAGAACATGCAAAGGTCGGAACCAAGGTCATGTTTGAAGTGAGAAAGAAAATGGTTGACGGAGTTGTCGTAAAAATGCCATTTGTTCCTACTCAGTATTACTCGGGCAAATAGTTCCAGCAGCAAATAGTTCCAGCAAACGTTCCTGCCCATTTATCATGCTTGGTTCGGGAAGTGAAATAAATCTATCTTACTGTTTTACTGATATACAGGGTATATTTATAGGCGCTATAGTTGCTTCATGAATTGCCAAAGAAGGTTGTGGGTTTTCATAAGGTGTAGGATTATGTAGTGTGAGGGTTGCTGATTTTGTCAAGAATCCTCCGGGTTCTAATTGGGTTCTACGTAACTAATATATTCCTGGTGAAAGAAATGTGATACCTGAAATTGTTACTTGAATGATTGTTTTATGATGGTATTGTTTGGGGGGTTCTTAGATGTGCCAAGGATGATGTTATCTTACTGTGATCTTGTTGATGTAGACTTATAAATACTGTGATTATTATTATATACGGTTCTCTTAGTCTGATTATTTGTGACCAAAGTCACTCAGATATTCTGGAAATTACCTGCACTGAACTTGGATGAATTTAGTTTTGTGCTATGCAGGGTTTTACCCAAATGTTGAATTCAGCGATCTGTTTGTTTTTTTACTTCCTAGTATAATACTTGTGGCCACCTTGCCTTGTCCAGATTTGATGCTGTACAATGTTCCTGAACATACATAAATTTGCATTTGTAGTCCTTGCCAGTATTACCGTAAATGATTTTTATGAAAATCAAACTTGCAATTATGTATTACTGTATATTGAGAAGTGTCAATCTGAAAGTCTAACATTAGACAGACAACAAGTTTTAAAATATCCTTTATTTTTTACACCATATATATAAATACTCATTTAATAGTGGTTCTGCATAAACAGATTCTGATGTATTTATCGCACCTTCCGAGTATTTTAAGTACTTTATGACAACATAACACTGTCTATATTGACACTGTAACAATATCCTCTCAACCGGTAACACGCTGCCAAATCTATGCTAAATTTTAACCCAAACATTTGACACAGGTAAAACTCAAAAACCACAATTGGTAAAATATAATATAAACATGCCCCCATCATGCACCTCTGGCTCCTGCAGTATATGCACTGTTATGTACTAAGTAGTAAGTACTATGCAGGTTTCTGTGCGCTTGGCTGTCTTGGAAATGTATGCCTTCTTGTAGCATATTGTAACAAAGATACCCTTCAGAAAAATATTCGTTGTTCATAAAATACATCACAAAAACTATGAAATAGGTAAATACCTGATCTTGTGGTAGTGAATATAATAATTACTGTTAGCACTACAATAAGAAATATTTCCAAAGATGGCAAATCTATCCCAAATGCTAATAAGCTGAATATAATATTTCCTTCATTTTGTAGAGGATTCTAGTGGTTTTGTGCTTGGGAATGGAGTTTATTAACCAATATAATAAAACTATCGGTACCCAAAATAAAAAAATGTGTTTCTATTCACTGAGAATAGTATGGAATTTGAAATGTCAATAAATATGGAAACAAAATAGTGACAATGTATATAATTTGAATCTGGTGATTGGAATGTTACTTATGAGCAAGATCATTACATTCAACATATAACATATTAATATCAATAGTGTTTAATTAAAATAGAATACGCTAAGTTCATGAAATAAATGCAACAACTTGATATGTATTGTGATTTGTAACAGCACGTCACCAGCACAGAACTGTATCAAAACTTCAACAGCACAGCTGACCAGATATGTATAGGCGAAATATCACAATAAAATTGTTCTATCTATTAAACATTTTAGGCTATTTTCAGTTGTTTCAACAATTTTACGGCTTCTGTTGTTAGCAACATTTGGCAGAAGGATATTATGCAATGAAGATAAGTTGACAAATGTAATACTGAACATCTAAACATGGCTAAGAGTATCTCTGACGATTACAGTCATTTAGTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01571	GCV_T	Aminomethyltransferase folate-binding domain	Domain	Interproscan
PF08669	GCV_T_C	Glycine cleavage T-protein C-terminal barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006222	Domain	Aminomethyltransferase, folate-binding domain	Interproscan
IPR006223	Family	Glycine cleavage system T protein	Interproscan
IPR013977	Domain	Glycine cleavage T-protein, C-terminal barrel domain	Interproscan
IPR027266	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan
IPR028896	Family	Aminomethyltransferase-like	Interproscan
IPR029043	Homologous_superfamily	Glycine cleavage T-protein/YgfZ, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43757	AMINOMETHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004047	Molecular Function	aminomethyltransferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006546	Biological Process	glycine catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-