| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Lsat_s004.g0619.t1 | HIGH MOBILITY GROUP PROTEINS HMG-A AND C | Lsat_scaffold004 | 16701590 | 16713634 | + |
| CDS | |||||
| Lsat_s004.g0619.t1 | |||||
| Transcript |
| Lsat_s004.g0619.t1 |
| Protein |
| Lsat_s004.g0619.t1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02178 | AT_hook | AT hook motif | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000116 | Family | High mobility group protein HMGA | Interproscan |
| IPR000637 | Conserved_site | HMG-I/HMG-Y, DNA-binding, conserved site | Interproscan |
| IPR017956 | Conserved_site | AT hook, DNA-binding motif | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23341 | HIGH MOBILITY GROUP PROTEINS HMG-A AND C | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000785 | Cellular Component | chromatin | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003712 | Molecular Function | transcription coregulator activity | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006355 | Biological Process | regulation of DNA-templated transcription | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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