Gene detail

Detailed information of Lsat_s001.g0221.t1 in Lamellibrachia satsuma Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Lsat_s001.g0221.t1	THREE PRIME REPAIR EXONUCLEASE 1, 2	Lsat_scaffold001	5277096	5282160	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Lsat_s001.g0221.t1

TCCCTGAATGACGTATTTTGAACCGGAACTAATTCTTGGTTCAATTATTTAAAGGCTTAGACAGCAATATTTTTATTTGTAGCGATGTTTGATTCATGTCATGCAGATTGACAGGTGTCAGACTGTCAGTGATGCATCCATGTCAGACATTTGTGTTTCTGGACCTAGAGAGCACAGGCCTCTCTGGGGTTGGAGAGAAGCCCCGGATCACAGAGGTGAGCATGGTTGCTGTCCATCGCACCATGCTGAGACGTTCACACCACCTGCCTCGAGTTATGGACAAGTTGACAGTCTGTGTGTATCCCATGCGGCAAGTGACCCCAGTGGCAACTGACCTCACAGGTCTGACAAATGACAACTTGTTCTGTCATAAAGACTTTGACGGTCGACTGGCGATGTTGTTATCAGGATTTATCACCCGTCTGGATCCACCAGTCTGCCTTGTGGCTCACAACGGCAACAGATTTGACTTTGGCCTCCTCCAGGTGGAGCTGCATCGCGTGGACCAGACTCTGCCTTCTGGTCTCTTGTGTGTCGACTCATTGCAAATGTTCCAACACATTGACGTTGCTGAAGCATCAACGGTGGCTGCAATACACAATTTCAACCCTGAAGTTTGTACACCTCAGAAACAAGTGACAAGTCCAGAAAAGCGCACAGAAGTAGGCAGCAATTCTCTCCACAAGCGTAAACCTGATTCAGTGACTCGTCTCATCTCTCCTCACCCACAGACTGCCAAGAAACGTCTGTTTGAAGAGAAAGATGTTGGCTTGTTGGAACATGCAGCTCCTGAGGTCTCTTCAGGGGATGATGATGAGCAACAGAATGCTGCTGATGCTGGTGTAGAGAACTGTGAAGATGATGCAGCAGATGTTAACATCAACAGTGGTAGTTGGAGCCTAGATGTGACCGACTCCGAGCTGTTGGCCGCGGACACAAATGCTACAAACACAGAGAACGGCACCTTTTCAAAGACATCCTTGGAAAAAGATGCACAGAATCGAGACAGTGCCAGTCATGATCAACCTGTTGTTCCTGTTACCAAATTGGTCGACAGAGTGGGTATTTCACAGGCAGTTTCAGGAGTGGTTGGTCCATGTAATACCACCAGTGGGACAGGCATGTCGACCCCAGCTAAGGTTAAGGTTATGTCCACGAGTATACTGATGAACACCCCTCCATATAGCCCCGGCTATGCATCCAGAGTGGCCACCCTCAACAGATCTGGCTCCTCGTCGAAGAAAAAGCAGTGTTACACCCTCAGGGAACTTCATAAGCGAGTAGTCGGGGTTTACCCTTGTAACAGTCACCACGCGGAGGGTGACTGTCTTGCTCTTGTTAGGATCTTCCAGAATGCAGCACAGCAAGCCTGTGAGTGGGCTGACTGTCATGCTGTTCCTTTTAGCAGCATCCCCCCACTGTACATACCAAAAGCCAGGCGTTCTCTCTCAGACGGCACATTTCCATACCAAATTTAACAAGGATTTCATCGAAAGCACGAGTATATTATACTGATCTTTTTAGACAATTTCTTTGTCATTAAATGAAGGAAGTTTTTAGAAATGTGATCACTATGACCAGTAACATATCATACTATGCATAATGTTTCAATGCAGCCATGACAGACATCGGCAGGCCACCATTACATAGCTGTCTACCAAATAATACCCAGTACTATGACAGATCATGTTCCTTGATAAGTAATTATTTACAAAATGTTGTCTGAGAGAATGATGTGTTCTGGCCTAATAAGGATGCGTGTGAGAATGTACAACATCATAACCTTACACACAGCTGGCCATGATGTATAAAAGTCTATCACAGACACATCTATCAATATCTTGCTGTTTACTTATTGCAAGAGTCATCTACATAGTACACCCAATTAATACGTTTGTTTGATTTGCAACCATAATTAGGTTGAATATTAGTTTAATCACTTAACTAATCGTCTTCTTCAATTTATGCATTCACCCAGCAAGATTGGCTGGAACAACTTCACTGGACTAGAATATATTAAAGCCAAAAAATCATACCATGGGTCTTGGCATTTATGGAAAGAAAACTGCATCATGTAAGAAAAGGCCATACTATTTGGATACAGTTGTGAATCTGGCAAAACAAAACCACACGAAGCACAATAAATTTGACCTGGTTAACCAAATCACATGAAATGTTTGCCGGTTTATGATTAGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013520	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040393	Family	Three-prime repair exonuclease 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13058	THREE PRIME REPAIR EXONUCLEASE 1, 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000738	Biological Process	obsolete DNA catabolic process, exonucleolytic	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008296	Molecular Function	3'-5'-DNA exonuclease activity	Interproscan
GO:0008408	Molecular Function	3'-5' exonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-