Gene detail

Detailed information of LLU|FUN_013657-T1 in Lamellibrachia luymesi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
LLU\|FUN_013657-T1	NUCLEOPORIN	scaffold_209	340816	368894	+

Gene Structure

More details in Jbrowse Sequence

CDS

LLU|FUN_013657-T1

ATGGTACAGTATGACTTGAAGTGGGAGCGCCTCCAGACCAAGATGGCTCATGTCAGACTTGGCATGCTATACAAAATAGTTGAAGGGCTTGTAGAAGTTCCCACTCCAGGTCACCCTGTGCCACGCCCTGAGCACCACACCAACTGCAGGAACTCCAAGCAGTTCAACACAGTGGACCCAAAGGTGGACATTTACAAGTTTGCCTTCCTACCAAGAGCAGTTGTGTGGAACACCCTACCAGACAATGTTGTCTTCGATGAGTCGTGGAGGCGTTTCGTTGCCGACTCCACCACGACTGGCTTCGGCACGGCTGGTACCGGGGGGTTTGCCACGCCGGCTTCAGGTGGTCTGTTTGGGGGCACTAACACAGCAACCCCTTCTGGAGGTCTATTTGGTTCCCAACCTGCTGCCTTTGGGGCAGCCCCGGCTGCGTCATCTTTTACCTTTGGAAGTGCCACCCAGACGGGCAGTTTGTTCTCCTCCGCTGTCCCCACTGGCACAACATCCCTGTTTGGCAATGCAGGCACCACTGCCTCCACTGGAAGTATCTTTGGGGCGACACCAGCCAAGATTGGGTTTGGGGGTGCGACTACTGCTACCAGTGGCACCATGGTGAAGTTTACGCCCCCGGCCGGCACAGAGACGATGCTAAAAGGTGGCAGTCAACAGAACATGAACACCAGACACCAGTGTATCACTGCCATGAAGGAGTATGAGAGCAAGAGTCTCGAGGAGCTACGTCTGGAAGACTACACGGCCAACCGAAAGGGAGTACAACAAGGCTCAGCTACAATATTTGGTGCAGCGCAGCCCGCCCAGACACCAGGATTTAGCTTTGGACAGGCCAAGACCACAACATTCACTGGAGGTTTTGGTGCAGCACCAGCATCTACAGGCCTGTTTGGTGCGCAGGCGACACAGCCGCAGGGGTCGACGATGTTTGGGGGCGCTACTGCTGCTAAACCCGTATTTGGCACCGCAACAACGTCCTCAGCGGCCGCACCAGCAGCATTTGGCGGCTTCGGAACCAATACAGGCAGCTCTCTGTTTGGAGGAGCAAACCCACAGCAGAAGAGCATCTTTGGTCAGACAGCAACCACCCAGGCAGGGGGCTTATTTGGTGGCACTCAAACCTCAGCAGCATTCGGCACCTCAACAGGATTTGGGACGTCTGGTGTCTTTGGTGCAACCACACAGGCAAGCAGTTTGTTTGGCAACAAACCCACTGGGTTTGGGACCCCAGTTGCCTCGACTGGCTTCTCCTTTGGCCAGCCAACTACTACCAGTAGTCTGTTTGCTAAGCCCACCACTACTGGCACCACTGGCTTTGGAGGCTTCGGTGCAACTCCCAATGCAGGATTTGGTACGACACAGACAAGCAGTTTATTTGGGAACAAACCAACCGGGTTTGGGGCCACGGTGAACCCCCTTGGCACTGGGTTCACTGCTAACACTGGGCTGACTGGAACCTTGGGGACAGGTACTTCCCTCTTTGGGGGACAGATGGCAAAGCCAACCCTTGGACTTGGCACAACATTTGGAGGTGGCAGCTTCCTTGGTGGTGTGGGTACAAGCACAGCCCTTGGAGGGTTGGGGGGAACAACTGCCCCCCTTGTGGGGGCCAATGATTTGGCGGCTCAGGCCCAGGTTCAGCAGCAGTTGCTGGGCCTCACCAACTCCCCATACGGGGACTCGCCCCTCTTCCGCAACCTCAAGCCTGATGACAAGAAACGAGAAGAGCTCGTGAAGCCAACAAATCCAGCGGCGCAGAAGGCTGCATTGACCGGCTCAACTCAGTACAAAGTGAGTCCGCGGCCAACGTCCAAGATCAAGCCGCGACCATTACACTCCATTGCTAATGGAAAGATGCAAATGTTTGAGGGTCTGGAGGATGATGATGCGTCGTTTGGTAGTGACAGTTTTGTGGCGCGACGCAGCATCAAGAAACTACAGCTGAAGAAGCCCCTAACTTGCCGTGACGGCCACCTGCCCTCTGTGCTCCACTCCCCCTCCTGTACGGACGGCCAGTTCGCCCAGTTCTCCCCTGTCTTCAACTACAGCAGTGAGCTGCAGGCACAGACAGAGGAGAGGACTGGAGGAAGTCAAGAGAAGCCAGGGTTTGCAAGTCGTGCAGCCACTGAGGACGAACTATCAGCACACCACAGTGTTGCCAAGAATCTGGACAACACCATTGAGGAGTTGAACCCCCGTGCACCTCTCACGTCAAACCTGAGTAAGCTGAACCGGCTCCTTCAGGGGAAGCAGGCCCCAGAGCAGGATTCACCCGAGACCTCCTTGCAAGAGGATGAAGACAACAGCATGGTCCACCCCGCTGGTATCCAGCTGACACGACCTGGCTACTACACTCTACCGGCTCTGGAGGAGTTGGGCAACATGGTCAATGAGAACGGTCGGTGTATTGTGGAGAACTTTGTTGTGGGTCGCGAGGGCTACGGCAACGTGCTCTGGCCTGGACTCACAGACGCTGCCAATGCAAACCTTGATGCTATAGTGCACTTCCGACGCAAGGAGATTACTGTGTACCCTGATGATGATAACAAGCCCCTTGTGGGAGAAGGGTTTAATAAGAAGGCCCAAGTGACTCTAGACAGTGTGTGGCCCATCGACAAGTCTGCTCACACCTCCATCAAGAGTCCAAGGCGCCTTCAAGAGATGGATTATCAGGAGAAGCTGGAGCGAGCATCCACCAAGATTGGAGCTACATTCATTGACTACCGACCAGAGACAGGCTCCTGGGTGTTTGAGGTGAAACACTTCTCCAAGTATGGCCTTCTGGATGACTCTGATGATGAAGATACAACAGTTGTGAAGCCAAGCAAGCCAAAGCAGCTGAAACTGACTCCTCACCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAACAAAAG

Transcript

LLU|FUN_013657-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04096	Nucleoporin2	Nucleoporin autopeptidase	Family	Interproscan
PF21240	Nup98_GLEBS	Nup98, Gle2-binding sequence	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007230	Domain	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain	Interproscan
IPR036903	Homologous_superfamily	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamily	Interproscan
IPR037665	Family	Nucleoporin peptidase S59-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23198	NUCLEOPORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000973	Biological Process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0006913	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0034398	Biological Process	telomere tethering at nuclear periphery	Interproscan
GO:0044614	Cellular Component	nuclear pore cytoplasmic filaments	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-