Gene detail

Detailed information of LLU|FUN_008660-T1 in Lamellibrachia luymesi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
LLU\|FUN_008660-T1	CRUMBS FAMILY MEMBER	scaffold_1563	1206	11982	-

Gene Structure

More details in Jbrowse Sequence

CDS

LLU|FUN_008660-T1

ATGTGGTCGGCCGACGTGCAGGAAGGAGCCAACTACACGATGGTGTGTGATGCAGCTGTTATTTGCTCCACGCGAAGAAAGAGAAGCGCCGGCCTGTCTTATACCTGGAAGGATCCGAGCCATGTCGCCGTGGGCACGAGTTCGAATCTGACGTTGACCAATGTCGCGCTGTCCGACGCTGGCAACTACAGTTGTATCGTCACGGACAACGTGTGTGCACATTGCACCGACTCTAAATACTTCCAACTCTCGGTGTATGTTTCCGGATGCAATACTGGCTTATGCTTCTGTAGCGGCCATGGCCAATGCGTGGACAATTTGGACGAGTGTCACTGCGATTGTGAGCCGTGTTACACCGGAACAGATTGTAACACTTTTGTTGATCCCGACCCGTGCGCCAGCAATCCGTGTCAGAACGGTGGAACGTGCTCACAGATATGCGGCGGCTACAGCTGTCGGTGTGACGTCGGCTGGTCTGGCAGCCAATGCTCCTGGCCGTGCAATCTCATCACGAGCCAAGTATGGTCGGCCGACGTGCTGGAAGGAGCCAACTACACGATAGTGTGCGATGCAGTCATTAATTGCTTCAAGCGAAGAAAGAGAAGCGCCGGCCTGTCTTATACCTGGAAGGATCCGAACCATGTCGCCGTGGGTACGAGTTCGAATCTGACGTTGACCAATGTCGCGCTGTCCGACGCTGGCAACTACAGTTGTATCGTCACGGACAACGTGTGTGCACATTGTACCGACTCTAAAGACTTCCAACTCTCGCCGGATGCAATACGGGTTTATGCTCCTGTAACGGCCATGGCCAATGCGTGGACAATTTGGACGAGTGTCATTGCGATTGTGAGCCGTGTTACACCGGAACAGATTGTAACACTTGTGATTGTTGATCCCGACCCGTGCGCCAGCAATCCGTGTCAGAACGGTGGAACGTGCTCACAGATATGCGGCGGCTGCAGCTGTCGGTGTGACGTTGGTTGGTCTGGCAGCCAATGCTCCAGGCCATGCAATCTCATCACGAGCCAAGTGTGGTCGGCCGATGTGCTGGAAGGAGCCAACTACACGATGGTGTGTAAAGCAGTTGTTATATGCAGGAAGCGAAGAAAGAGAAGCGCCGACCTGTCTTATACCTGGAAGGATCCGAGCCATGTCGCCGTGGGCACGAGTTCGAATCTGACGCTGACCAACGTCGCGCTGTCCGACGCTGGCAACTACAGTGCAACACCATCAGAGTATGACATGTTTAGTATGTGCACAGTCGCCTTGTCCTCGAAGATGTTTGCAGCATTTGACACAATGTGTTGCAGTTGTATCGTCACGGGCAACGCCTGTGAACCTTGCACCGACTCCAAAGACTTTCAACTCTCGGTCTACGTGGATCCATGTCTGTCTAACCCGTGTCAAAATGGAGCGACCTGTGACACAGGTGATAACACATTCACGTGCCGATGCGACATCAACTGGAGCGGAGCAGTGTGTGACATACCATGTAAACTGGTGTCGACAGACAACGATTCACCAGTCGCCGAGCTGGGTTCGAACCTCACGCTCAGTGTAGAGCTCGCTGGCTGTACGAATCCTCAGATCACGTGGAAGGACGTACACGGTCGGGTCATCGGTACTGGTCAACGTCAGACGTTGATTAATGTTAAGTTAGCCGATGCGGGCGTGTACAGGATGACAGCCGAAGAAGCCGCATGCACACAGCAGATAGATTTTCATCTCACGGTCTACACGAAGTGGGACAGTGGCGTATGTGTTGCCTCTGATGGACAAGAAAGTTCCGCGACTGCAGTGGAACCCGGCAGCGCCTTCAACCTGTCGTGTGTCGTGCCACGGCTGCCGACGCCAGAACTGACCTGGGTCCGAGACAACGTCACTATGACGACAGAACTCCTCCTGGTGGAAAGCAATGACATCGACTACTCGAGACTCGATTTATTGGTGGCTGAGTTTGCCAAGGAAGACGCTGGTCTCTATCGATGTGTGGCCTCCTACTTCGACGCTACCGTCAACGTGTGTGACGTTGTAGTGTCTTCTGTCGATACAAATAGAAATGAAACTTCAGTGCCGGAAACAGGGATGTCGGTGTGGATTCCTGTCGCCATTGGGGCAGGCGGAGCTCTCGGTATCTTGGCAATCGTTGCTTCCTGCTGTCTGCTCTACTACCTCATCATGAGGAAGAAGAAACGCAAAGAAAAGAAGAAGAACCGAGTTGAGCCGTTCGTCGATGAGAATGAAGAGAAGACTGCGTACTGA

Transcript

LLU|FUN_008660-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991	Cellular Component	protein-containing complex	Interproscan
GO:0045197	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-