Gene detail

Detailed information of LLU|FUN_005442-T1 in Lamellibrachia luymesi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
LLU\|FUN_005442-T1	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	scaffold_130	308603	320434	-

Gene Structure

More details in Jbrowse Sequence

CDS

LLU|FUN_005442-T1

ATGTGGTCAACTGCCCGGCTGATGTTTGCACTAGGGTTGATACTGGTCGTGGTGTGTCCTGGCTCTGGGAGTCGTCGTGGAAGGGGTTGCACAAGAGTGAACCGTGTTGGGGTTGGCTGGGCGTGGACGCGTCCATGCGATCATCGGTGCGGCAACTCGAGCGTGCAGTCTCGGACGCGGGGCGCAGCGATATCAGTCTCTAGAATCGGCTCGGGCTGCTCCGGCAACGCAACTGTGTCTCGAATGAGCAACATATTCTCTGTCTATGGCGCCACTGCCAGATACGAAAGCTGCAAGGGACAGAGTGGATCCCGGGGAACGTGCAGCAAAGCTTGCAGACCATGTCAGAAACACAGAACTGGCAAGAAAAGATGCAATTCTTACAAATGCACGTGTCGTCCGGACGTTGGTAAGAGAAACTGTCGAAAGAACACAACCGCATCCTTCGTGGACGGCCGGAGATACATGTGTCAGTGTGTCAGCATATATCCTTGTGCAAAGCCCAGGAAAGACATGAACGAGTGCTATAGCGGTCCATGCGAAAACGGTGCAACCTGCGTAGACCAGGTCAACAGCTACCAGTGTTCCTGTGTGCCCGGATATAGCGGCGACAACTGCGAACACAACATGAACGAGTGCTATAGCGGTCCATGCGAAAATGGTGCAACCTGCGTAGACCAGGTCAACAGCTACACGTGTTCCTGTGTGTCGGGATATAGCGGCGACAACTGCGAAAACAATATAAACGAATGTGCCAATTCGCCGTGCGCCAACGGCGGATCCTGCGTCGATAGCATCAACAGCTACACATGTCGGTGTGTCGCCGGCTATTCTGGTGGAAGCTGCGATATAGACACGAAGGAATGCTACAGTGGTCCATGCGAGAACGGTGCAACCTGCCTAGACAGGATCAACAGCTATGAGTGTTTCTGTGTGCCTGGATACAACGGCGACAATTGCGAGCACATCGTGGTGGACGGCGGATGGGGAGCCTGGTCGACGTGGGGAGAATGTTCAGAATCGTGCGGCCGGGGAGCGCAGACCCGGCACCGCCAGTGCAACAATCCGTCCCCCATGAACGGCGGCCGCTACTGCCTTGGCTCCTCCACCGAGACTCTCCCGTGTACGTGCGACCCTAAATTCGACGCAGCCGCCGCCTGCGATCGTCGGATGGCTACTGGCGGCACTCCTGGTTACTTCGAGGACCGCTGCGACTGTTACCACTACTACGTGTGTATGAGACTGACGACCGGCTGGAAGGCCATCCGAATGCCGTGTCCCAAATGTCTAATGTGGAGTCAGTCGAGCTACACGTGCGGCGTTCTCAATCAGAACTGCATCGACAACACCGAATCAACGACCACAGCGAGCGTCTTGAAGGAGATCACTTGTGTCGACTTCGAGTCTGGTTGGAACGGCATGAGGGCTACAAATGGCATCTACATCGCATCGCCGAACGTCAAGATCAAGTCACGCACTGCCTTCGGTCGTTCAGCCTATTTCAACGGCGTCTCGGCGAATCTTAGAGTACCTCGATTCGCGAGCAGCTACAGTACTTTCGGTGCGTTCGCCATCTCGTTCTGGTACAAGCGACTGGACACAACGACAGTCGTCCAAGGCCTCATCACCAACGGCGACTGCACCAACGAGCCGTCCATTCTCATCTTGTCCGGCAAGGACAGCCTCGATGTCAAGTTTGCAACCGCCACTTCACATGCTGTTCAATACAACGACATTCCGAGCTCTGTGAACGTCTGGCATCACGTCGTGCTGTCCTACGACGGAGATATACTGGACATCTACGTAGATAAGGTGAAGACCCAACTGGGCACAGCGCAAGGACGTATTCTGGAGAAATCCTGTCCGATGGTGATCGGGCACGCCAACGCAGCAGGAGAAGGAAGAGGATACTTCAGGGGATATATGGATCAGCTCTGTTTCTACGACCGCGGCCTAACAGCGTCGGACGTTCACGGACTCCACGAAACTCACAATTAA

Transcript

LLU|FUN_005442-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR006558	Domain	LamG-like jellyroll fold	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12916	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-