Gene detail

Detailed information of LLU|FUN_003883-T1 in Lamellibrachia luymesi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
LLU\|FUN_003883-T1	ALANYL-TRNA SYNTHETASE	scaffold_12	1181416	1220149	-

Gene Structure

More details in Jbrowse Sequence

CDS

LLU|FUN_003883-T1

ATGTTTAAGGTCCACGAATCTGATGCAAGTTTTGTTGTACAAAAGCAAGTGCATTTTCAGCAAGTTTTGTGGCACAAAAGAAAGTGCATTTTCTACATCGTTAGCAAAATCAACAAAATGGATGAGACATTAACATCCAACGATGTGCGGCAGAAGTTCATCGAGTTCTTCCAGGAGAAGGGGCACAGCTATTGGCACTCGTCCTCCACCATCCCCCTCGATGACCCCACTCTGCTCTTCACAAATGCTGGCATGAACCAATTCAAACCAATCTTCCAAGGCACTATTGACCCCAACAGTGGCATGGGGCGACTGTCCCGCGCTGTCAACAGTCAGAAGTGTATCCGTGCTGGTGGCAAGCACAATGATCTTGATGATGTTGGCAAGGATGTCTACCACCACACATTCTTTGAAATGCTTGGAAATTGGTCCTTTGGAGATTACTTCAAGAAAGAGGTGATATCATGGGCGTGGGAGTTCCTCACTGAGCACCTCAACATGCCTAAAGATCGTCTTTATGTGACATACTTTGGCGGAGACAAAGAGAGAGGTCTTGAACCTGACATTGAAGCCAAGGAATACTGGTTGGCACTTGGGTTGCCTGCTCAGCGTGTGATGCCATTTGACATGAAAGACAACTTCTGGCAGATGGGAGATACAGGACCATGTGGACCTTGTTCAGAAATTCACTTTGATCGTCTCGGTGGCCGTGATGCATCACACCTGGTCAACCAGGATGTGCCTGACGTACTCGAGATCTGGAACCTTGTATTCATGCAGTACAACATGGAGACAGACGGGCGTCTGAAGCCTCTGCCCAAGAAAAACATAGACTGTGGCCTTGGTCTTGAGCGACTCACCTCGGTCGTACAGAACAAGTCATCCAACTACGACACAGATCTCTTTAGTGTCCTGTTTGATGTCATAGCCAAGCTGACCGGCAGCAGACTTTACACAGGCAAGGTGGGAGCAGAAGACACTGATGGAGTGGACATGGCGTACAGAGTGCTGGCTGATCACGCTCGCTTGCTGACCGTTGCCTTCTCAGATGGCGGCCGACCGGACAACACCGGCAGGGGTTATGTATTGAGACGGATTCTTCGACGAGCTGTTCGCTATGGCACAGAGAAACTGAATGCAAAGCCTGGAATGTTTGCCTCACTAGTTGATACAGTCGTTGTGCTTCTTGGAGAAGCCTTTCCAGAGGTCACCAAAGACCCACAAACGGTGAAGGACATCATCAATGAGGAGGAAGTCCAGTTTCTGAAGACACTCACCCGAGGGAGGAAACTTCTGGAGAGGACCATTGCTAAACTCGGCCAAAACATCTGTTTGCCAGGTGACATCGCATGGAGACTTTATGACACTTTTGGCTTCCCTGTTGATCTCACTCAGTTGATGGTCGAAGAGAAGGGAATGACAGTCGACATGACTGCCTATGAAGAGGCCAAGAAACAGGCACAGCTGGTGTCCCAAGGCCCTGGTGGGACTGTGCAAGAAGGGGTCAGTCTTGACGTCCATGCCATCAGCGAACTGCAGCAGCAGCAGAAGTTGCCACCAACCGATGATAGCCCCAAGTACAACTACACGATCAGTGAAAAATGTGATTACGAGTTTGGGCCGTGCTCTGGTGTGGTCAAAGCCCTCAGACAACGCCAGCAGTTTGTGGACACAGTGACCAGTGGTCAGGAGTGTGGGGTACTGCTCGACAGGACATGCTTCTATGCTGAGCAGGGCGGTCAGAACTACGACGAGGGGTACATGGTGAACAAGGGTAATGAGGAGGTGGAGTTCACAGTGAAGAATGTGCAGGTGCGAGGTGGCTATGTCCTGCACATCGGCAGCATAGAGGGCACGCTGCGCATTGGAGACACCATGAAGCTATTTGTTGACCAGTCGCGACGACGCTCCATCATGAACAACCACACCGGCACCCATGTGTTGAACTTTGCCCTCAGGAAGGTGCTGGGAGAAGCCAACCAGCGGGGTTCACTTGTCGCCCCGGATAAACTGCGCTTTGACTTCACTGCCAAGGGTGCATTGACAGCAGCCCAGTTGAAGAATGTTGAACAGATTGCCAATGAAGTGTCAAAGAAGAACCAAGTGGTGTATATGAAGGACACGCCATTGGCTCAAGCAAAGGCTATCAAGGGACTACGAGCAGTATTTGATGAGGTATATCCAGACCCTGTCCGTGTCGTCTCGATTGGCGTCTCTGTCGATGACCTGCTGCACGATCCCGATGGCCCTGCCGCATTGAATACGTCTGTCGAGTTCTGTGGTGGCACGCATCTCCAGCGCACTGGGCACATGGGTGATTTTGTGCTCGTCACGGAAGAGGCCATTGCAAAAGGCATCCGCAGGATAGTTGCCATGACAGGCCATGAAGCAGGAAAGGCTTTGCATAGAGTTGAGGTACTGGAGAAAGACTACGAAAGACTGAGACAAACGGTGGAGAATGCTACAAAGACCAAAGACTACTCGCACAAAGCACTCAGTGGTGAAATTGCTCAACTGACAGATGAGATCTCAAAGGCTTCTATTTCATACTATTGCCGTGATAACCTGCGCAACAGTCTCAAAAAGTTGAAGAAATTCCTGGATGATCTCGACAAGGCACGGAAAGCTGCCCTTATGAATGAGGTGATTGAGGAATGTAAGAAGAATATTGCTGCAACACCTAACGTGCCATTTGTGGTGTGCGAGTTAAAAGCATTGTCTAATGCTAAGACCCTTGACGCAGCCATGAAGCAGTACAAGGTACTGTCACCCAAGACAGCCTGCATGTTCTTCTCTGTGGATGAGGACATTGGCAAGATACTCAGCATGAGTTGTGTGCCGTCTGAGGTGGCGAAAGCGGGCTTGAAGGCAAACGAGTGGGTGAACCGCGTGTCTGAGGTGATGGATGGCCGAGGTGGTGGCAAGGACATGTCTGCCCAGGCCACAGGCACCAACATCAACTGTCTTAAGCAAGTGCTGCAGATGGCAACTGTCTATGCACAGGAGAAACTGGGCATAAAGCCAGCTATGACATCAACAATTGCTGGTGGCCGTGTCTCACTCCACTCACTCAACCTCTTTCTCAGCAGTCACAGTTACATTTCTGGCTATGAGCCATCACAAGCTGACACTGTTGTGTTCGAAGCCCTTGGAGATACACCGCCACCATCTCAGCAGCATGCACTGAGATGGTACAGCCACATCGCATCATATGGCGCAACAAAATCCCAATTTCCAGGAGTGAAACAGTCACTTCAGGAACTAGGTTTTGGTGATGCCTCTTCTGCAAAGCGCAAAAATGAAGACAAAGATGATGATTTTGACCTGTTCGGATCAGATGACGACAACAATGCAGAGGCAGAGCAACTGAAAGAAGAAAGAGTGAAAGAGTACCAGGAGAAGAAGTTGAAGAAGCCAGCTGTTGTTGCCAAGAGCAGCATTGTGCTGGATGTGAAGCCGTGGGACGACGAGACGAACATGGCGGAGTTAGAGAGGCGTGTGAGGACGGTGCACACAGACGGCTTGTTGTGGGGAGCCTCCAAGCTCGTGCCACTGGCATACGGCATCAAGAAGCTTCAGATTGGCTGCGTTGTGGAGGATGACAAAGTTGGTACAGACTTCCTGGAGGAGGAAATTCAAAAGTTTGAGGATTTTGTGCAGTCGGTTGACATTGCTGCATTTAATAAGATCTAA

Transcript

LLU|FUN_003883-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00736	EF1_GNE	EF-1 guanine nucleotide exchange domain	Domain	Interproscan
PF01411	tRNA-synt_2c	tRNA synthetases class II (A)	Family	Interproscan
PF02272	DHHA1	DHHA1 domain	Family	Interproscan
PF07973	tRNA_SAD	Threonyl and Alanyl tRNA synthetase second additional domain	Domain	Interproscan
PF10587	EF-1_beta_acid	Eukaryotic elongation factor 1 beta central acidic region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001326	Conserved_site	Translation elongation factor EF1B, beta/delta chains, conserved site	Interproscan
IPR002318	Family	Alanine-tRNA ligase, class IIc	Interproscan
IPR003156	Domain	DHHA1 domain	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR012947	Domain	Threonyl/alanyl tRNA synthetase, SAD	Interproscan
IPR014038	Domain	Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domain	Interproscan
IPR014717	Homologous_superfamily	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Interproscan
IPR018162	Homologous_superfamily	Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily	Interproscan
IPR018163	Homologous_superfamily	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	Interproscan
IPR018164	Domain	Alanyl-tRNA synthetase, class IIc, N-terminal	Interproscan
IPR018165	Domain	Alanyl-tRNA synthetase, class IIc, core domain	Interproscan
IPR018940	Domain	Elongation factor 1 beta central acidic region, eukaryote	Interproscan
IPR023033	Family	Alanine-tRNA ligase, eukaryota/bacteria	Interproscan
IPR036219	Homologous_superfamily	Translation elongation factor eEF-1beta-like superfamily	Interproscan
IPR036282	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan
IPR045864	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR050058	Family	Alanine--tRNA ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11777	ALANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0002161	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004813	Molecular Function	alanine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan
GO:0006419	Biological Process	alanyl-tRNA aminoacylation	Interproscan
GO:0043039	Biological Process	tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-