Gene detail

Detailed information of LLU|FUN_001959-T1 in Lamellibrachia luymesi Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
LLU\|FUN_001959-T1	BREAST CANCER ANTI-ESTROGEN RESISTANCE PROTEIN 3 HOMOLOG-LIKE PROTEIN	scaffold_109	591113	606684	+

Gene Structure

More details in Jbrowse Sequence

CDS

LLU|FUN_001959-T1

ATGGACTTGCCAGCGACCCCGCCGCAGCCACTAGGGGGCACCCTTCAGAAGCACATCCCATTGGCTAAGTGGCTAGACATGCTCGGCTTGCCAGAGTACAAGGACGTGTTCGGTGCATACTCTGGAGTTGAGAACATGCTGCATTTAACCGAAGCTGAAATCCGTGATCTGGGCGTTAAGAACAGTGCTCACCGTGCTCGAATCATCTCAAGTCTGGTGAAATTGCGCCAGAAACGTCTGCAACGTCAGACCCCGCGGGGCTGTGGCACCCTTTATACTTCTCCTGAAATCTACAGAGGTGCAACGCCTCCAGCAGACATTAACCACTACAGCTACACAACTGTGAAACAAGCGACCTATCAACCGCTCGATATGCCTCCTGCGACACCTGATGCCCATGTGCCAAACTCAGTGTCCAAGCGAGACATGCCACTTTGCCCCGCCTCCCCGGACCTGACCAGGTACTTGTGGTACCATGGAACGATCCCACGGAAACAGGCCGAGAAACTTGTGCTAGATGAAGGCGACTTTCTTATCCGCGATTCTATCAGCCTACCGGGGGACTTTGTGTTGACTGTGTGTAGGAAGGGTACGCCGCTACACTTCATGCTTAACAAGCAGGTGCATCCAGATGGCGCACAACTCAAGGTACAGTATCAGTTCGAAGAGGCCCTGTTCGATACAGTTCCGGAGTTGATACAGTTTTACATGGACAATAAAAGAGCCGTATCTGATGCATCAGGTGCGATCCTTCTCGGGCCGGTCGAGCGATGTGGACCAGTGGAGTATTGCGATGTTCGTTTGGTAGCACTGGAGCAGTCAGTAGACGGGAAGTATCTGTCACCAAGTCCACAGCGCTCAGCCAGCACCCACAGCGATAGTCCACCACGGGCAGACAGACGGCTGTGCAGAGACAGACAGCCCCGTCGTGTCGGTAGCCAGCCATTACTGTCTCTAGACTACACAGATGCTAGCTTACATGGTCAGAGGGACAAGTTCGGCAGCCTGCCGTCTATAGCCCCACAGCATGCTGGGAGCATTGATCCACCTCGAACGCTGCCAAAGAGTCTGCTACGCCATTTCCGGGCCGGAAGTGAACCAGTGCTCTCTCCACCGTCGACACTGGAGGTAAAGAACTATCTGTTTGTTAGCAACACTGCAGATCTTGCGGGATCCGATAGTAATCTTTCAAAACCTCCACCGGCCAAACCAAGCAGGGTGCCTACTATCAAGTACAGCAGCACGAATACCAAGCCGGTTGTAGCCATCAGAAACAAGTCTCTGTACGAAGATGATGGTCGCGACTACAGCGATTATGATCAGGTGAAATCATGGCCCGCCGCTCTCAAACTATCGGTTGATTCCGACGACGACACGCTCAAAAACGGCCAAGCTGCAAAACCTGTACCGGATGCAGAAATTGGTGATAACAGTGTGCCAAGAACAGTGGACGATGAATCTAGTCATTATGATGTTCCGAGATCACGGAAGGAGTCGAGTCCTGCACACGGTTCACAACGCGACAGCACGTGCAACGAACTGCCCGTCAAACTGCCTCGGCAAGCTGTCAAGTTGCCAGATGCCGAAGAAAAGTCGTACTTCGACGTTGAATGTTATATGTCGAGTTTACTCACGCCGAACAACAAGCCACTCGAGAGTTCGGCCGTCACTACGATCAGGATGCTTCTGCTTGAGTGTGACCCGACACTGTTGGCGCAGCACATCACACACATTGACCTTGACCTCTTGAAGGTCACTGGCAGCCATGACATTGGTGTTGGTGTTTTTTCTGGGTTAGAACATTTGACCTTGCCACAAGGTCAACAGCTGCGACTTGACCTACTTGAGAGGTTTCACTGCCTCAAGCTGTTCGTTGCAACAACCCTGTTGATGTGTATGAAGCTTGGAGAGCGCGCCCAGCTCTTGCACCAGTGGATCCTTGTTGCGACGCAGCTCAAGGGCATCATGGGAAACCTGTTCAGCTTCTCCGCGGTCATGGAGGGCTTGCAGCTTGAGCAGATATCGCGTCTCAGTCAGACATGGGCTCGGTTGAAGCAGAACTATGCGAACAGCGATGCGTCATTTAAGACGAGATTACAGCCATTGCTGAAGTCAATGGATGAAGCCGGCAGTATGCTGCCTCTACAAAACATTACGGTTCCCCACATCATTCCACTCGTCCAGCTCCTCGTGCGACCTGTGTGTGACCTTGAGGCAGCCGTGATGTCGTGGGAGAAGGCGAGTGGCGACCTTGGCCTTGACATTGTGCTTGCTCACCTTGACACTGCACGCATCATCACGGAGCATTGTGGGTTATATCGCGTCACCGGAACTAGTCTTATGAGGACGTTCTCCATTGACCCACACCTCCGGGACCTATTTCGCACGGAGACACAAATGAAGTTAATGTGGGGCGCAAAGGGGGCGCTAGTGGGCTCCACATCGCGCTATGCAAAGTTTGAAGAGGTCTTGACGGTTTTGTCAGAACGACTAGAACCCGAGGAGACTGCGTTGACCAATCGCGAGACGTCGCTATGA

Transcript

LLU|FUN_001959-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017	SH2	SH2 domain	Domain	Interproscan
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00617	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980	Domain	SH2 domain	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR051853	Family	Adapter protein with SH2 and Ras-GEF domains	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14247	BREAST CANCER ANTI-ESTROGEN RESISTANCE PROTEIN 3 HOMOLOG-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0033138	Biological Process	positive regulation of peptidyl-serine phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-