Gene detail

Detailed information of KAK2194248.1 in Ridgeia piscesae Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2194248.1	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	ctg1_pilon	644292	666911	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2194248.1

ATGGGTGACGACAGCAGCGCGTTTCAAATCGACCGGGGCAGTGGTGTCCTCACCACCGCGAGAGACATAGGGAAGGCATTGGGAGAGTCCTACAAGTTCTACGTCATCGTCACGGCTGGCGGGTTGTCTGGCTATTCCGAGGTCGTCGTCGAAGTGACGCGAAAGAACATGTTTGCGCCGACATTCCGCCAGGTGGCGTACAACGTGTACGTGTATCGCAATTCCGCGGCGGACGCGCACGTGCTCGCGATGCACGCCACCGACCTCGACGCGGCCAACTACAACCGGAAGTTCTCGTATTACGTCACCGGCGGCCGGTATTCGTCGTACTTCCGGATCGACGCGAGCAGCGGCGAGTTACGGTTGGCGAAGCGATTGGAGAACCCGCCGGAAGCCTTCGACGTCGCTGTCACTGTACGCGACACAGGTTCTCCCGTGAGAGAGACGACAACCATTGTCACCGTGCACCTCTCCGACATATCAGCGCCGCGTAGCGTCCACGCTGTCAACGTGACGGCGTCGAGTGCTGCCATCTGCTGGCAGCGACCGTTGCACGGAGACGTCCGCGGCTACACAGTCGTCTACGAAAGCGTCAACGGCACCGGGCTGACACTGTACACGTCACGCAACACGACGGACGAGAGGGCGTGTACCAGGGTGCTGGGGGTGAAGACGTGGGACACGTACCGCGTGACGGTGACGGGCCGAGATGCGTGGGGCACGCCGGGAGCACAGAGCGACGAGATCGAGTTCCTCGCCAGGAACGATGCCTGCTCCAACCACGCGTGTCTCGCCGGTTCGTGCACGCTGCTTCCGGTCTACCCGGGCTACAAGTGCGCATGCTCGTCTGGCTACTACGGCTACAGCTGTGAGTTCTTCAACGCATGCGCCGTGAAGCCGTGTGCCAACGGCGGCGTGTGTCGCAACACGTCGAGCAACGCCTACCTGTGCGCGTGCAAAACGGGCTTCTGGGGCAACAACTGCGACAAGTTCGACCCGTGTACGACGTCGCCGTGCGCGCACGGCGGCACGTGCCAGAACACGTCCAGCTCGTCGTACACGTGCGCATGTCGCGAGGGTTACTACGGCGCCAACTGCCAGTCGTACAACCCCTGCTACGTCGCCGTCTGCAGCAACGGCGGCACGTGCGAGTCGCTCTCCGAGGATGCGTACAAGTGCACCTGCCGAGCTGGGTTTTACGGTCGGAACTGCGAACTCGTCAACCCTTGTTCATCGTCTCCCTGTCGACACGACGGTCGCTGCTACAACTCGAGTGCCGGCACGTACCGGTGCGTGTGTCGGGAGGGTTACTACGGCACCCAGTGCCAGTGGTACAACCCGTGCGTGACGGGGCCGTGCAGCAATGGCGGCGTCTGCAGGAACACGTCCCGGGGCGAGTTCTCGTGTGACTGCGCTAACGGCTACTACGGAGAGACGTGCACTCGTCAGAACCTGTGCATCCTCTCCAACCCATGCAACCAGGGCAGCTGCGATTGGACGGGAGACCGCCAGTACTCGTGCAAGTGTAAGCTCGGATGGTACGGCCGCACATGCGCAGACTACAACCCGTGCGTGACGAAGCCGTGTAAGAACGCCGGCACGTGTCTGCACTACAACACGATGCAGTACATCTGTCAGTGCACCAACGGCTACTCGGGCAAGGACTGCGAATACTTCAACGCTTGCAGCTCGTCACCGTGCATCAACGGCGCCACCTGTCGGAACGTGTCAAGCGGCGTGTTCTCGTGCAACTGCGCGAGAGGCTACTATGGCGAGATCTGTCGCTACTACAACCCGTGCAGCGAGGCGCCGTGTCTCAACGGCGGCGTGTGTGTTCACACGGAACACGGCAAGTACACGTGCGTGTGCGAGCACGGGTACTCACGCCGGGACTGTGACTACTTCAACGCCTGCAGTTCGTCTCCGTGCATGAACGCCGCCACGTGCTCCAACATGACATCCGGCGGTTTCACGTGCCGCTGCGCGCCCGGTTACTATGGCAACGCGTGCGAGAACTTCGACCCGTGCGCTCTCGTCAACTGCGAGAACGGCGGTCGCTGCCTGGCGACGGGCGACGGCAAGAAGGAGTTCCAGTGCGTCTGTAAGTCGGGCTACTACGGGCGCACGTGCTCCAGCTACAACCCGTGCGTGTCGGCGCCGTGCGCCTCGGAGAGCACTTGCATCCTCATATCGAACACGGTCTTCCGGTGCGCGTGCGCCGTCGGCTACTACGGCCCGAGGTGCGACAAGTTCAACCTGTGCTACCGGAACCCGTGCGAGAACGAGGCTCGCTGCGTGAACACGTCGAGCATGGCGTTCCGGTGCGAGTGTCAAAAGGGCTACTACGGCAAGACGTGCGCCTACTTCAACCCGTGCGTGCTGGACGTCTGCGAGAACGGCGCGACTTGCGTGAACGTGTCCAGCCGCAACTACATCTGCCGGTGTCCGAGCGCCTACTACGGCACGAACTGCGAGAGGCGCAACGCGTGCGCCAGCCGACCGTGCAGGCACTTCGGCACGTGCGTGAACACGACAGACGGCAACTTCCGGTGCCAGTGCTCCAACGGCTACTTCGGACGCACGTGCGAAAGCTATGACCCGTGCACGCGCTCGCCGTGCCTCAATGTAGGCTCGTGCACGAATGTCACGAACACGACGTACAAGTGCGCGTGCGCCGACGCGCGCCTCTTCGGCAGCGTCTGTCAGGACTACGACTTCTGTGCGCAGAAGCCGTGCGCCAACAACGGCACGTGCCTGCTTCGCGGCATCCGGGCTCTGCTCGACACCGACCGGCTCAAAACGTACGCGGTAGAGGTCGCCGGCGTCGTGCGCAACGTCCAGGTCGAGAACGCGTACGCGTGCTACTGCACTTCCGGTTTCGAGGGATTCCACTGCGACGGCGACGTCAATGAGTGCGCGTCCAGTCCGTGCGAGCATGGCGCCACCTGCGACGATCGGATCAACGGATACAGGTGTCGCTGCGCGTCCGGATACACAGGTAATCATTGTCAGGTCGAAGTGCGCGAATGTAGTTCGGCGCCGTGCCACAACGGCGCCACTTGCGTTGATCTCGTTAATATGTATGAGTGCGTCTGCATCCCCGGCTTCACGGGCGTCCAGTGTAGGTGGAACGTCGACGAGTGCGCGTCCAGTCCGTGTCTCAACCGCGCAACGTGTCGTGACCGCGTCGACCGGTACGATTGCGCATGCGCCGGCGGTTTCACCGGCGTCCACTGCGAGACGGACGTCAACGAGTGCGCGTCGGATCCATGTCGAAACGGCGCCTCCTGCGTCGACCTCATCGACCGTTACATGTGCGCATGCCCGGGCGGATTCACGGGATCGCGATGCGAGTTCAACATCAACGAGTGCAACAGCGAGTCGTGCGCGCACGGCGGCACGTGCGTCGACCTCGTGGCGCGCTACCGCTGCGAGTGCGTGCGCGGCTACACGGGCACGCACTGCCAGATCAACATCGACGAGTGCCAGTCGCGGCCCTGTCGGAACGGCGCCACGTGTCACGACCTTGTCGACGGCTATACGTGTCACTGCGCCGACGGATTCGTCGGCGTCGAGTGCCACACGAACGTCGACGAGTGCGCATCGTCGCCGTGCGTCAATGGCGCCCCGTGCATCGATCGCGTCGACGGATACGACTGCGCTTGCGCCGCCGGATACAACGGTTCGGCGTGCGAGATCGACGTCAACGAGTGCGCCTCCCGGCCGTGCGCCAACGCCGGCCGATGCACGGACCTGGTGGACGCGTACGAGTGCGCATGCGCGCCGGGGTTCGCGGGAACTCGCTGCGAGATCGACGTGGACGAGTGCGCGTCGACGCCGTGCGTCAACAACGGCACGTGCTTCGACCGCGTCGACGCATTCACGTGCGCGTGCGCCGACGGCTACGTCGGCGCGACGTGCGCGCGCGACGTGGACGAGTGCGGCTCGCAGCCCTGTCGGAACGGCGCGATGTGCGTGGACGAGGTGGCGGCTTATCGCTGCGACTGCCGAACCGGATACGCAGGTAAGGACTGTCAGATTGATGTCGATGAATGCCTCTCCTCGCCTTGCAGCAGTGGCGCCACCTGCACGGACAAGGTCGACGGGTTCGCGTGTCGCTGCGCGCCGGGTTTTGTCGGCGCGCTGTGCGAGGTTGACTTCGACGAGTGCGCGTCGACGCCGTGCCGAAATGGCGCCACCTGCTATGACGCCGTCAACCGGTACAGTTGTGCATGCGTGCTCGGATACACCGGCGCGAACTGCGAGCAGAAGCGGAAGGAGTGCGTGACGAACAAGTGCCAAAACGGCGCCTTCTGCATCGAGCACATCGGCAGTTATACGTGCGAGTGCATGCCGGGATACACGGGCACGTTCTGCCAGATCGAGACGAACGAGTGCGCGTCCAACCCCTGCCAGAACGGCGCCACGTGCGCGGACGAGGTCAACCGGTACACGTGCTCATGCGTTTCCGGTTACAACGGCGTCACGTGCGCGATCGACGTCGACGAGTGCTCGTCGTCGCCGTGTCAGAACGAGGCTGAGTGCGTCAACCAGGTGGGTCGCTACACGTGCCGCTGTCGCGCTGGCTTCACCGGCGAGCGGTGTCAGCACAACACGAACGAGTGTGCGTCAAACCCGTGCGTGCGCGGCACATGCGTCGACGGCGCCAACGCCTACGACTGCAAATGTGCGCCCGGCTACGGTGGCGCCCACTGCGAGACTGAAGTGAACGAATGCCAGTCGGCGCCGTGTCAGCACGGCGCGGTGTGCCACGACTTCCTCAACCTGTACATCTGCGCATGCCCGGACGGCTACCGGGGCGTCAACTGCGAGCTGGAGTACGACGAGTGCGCGTCGAATCCGTGCGCCAACAACGCCGCGTGCGCCGACCTCACGAACGCCTACCAATGCCGCTGCCTACCGGGCTACACGGGAACGAACTGCGTGCGCGACATCGACGAGTGCGCGTCGGCGCCGTGTCTGAACGGAGCCGAGTGTGTCGACGGCGTTGACGGCTACACGTGCGCGTGTCGGCGCGGCTACACGGGCGCGCGCTGCCAGCGCGACCGCGACGAGTGCGCCAGCTCGCCGTGCGAGAACAACGCGCGCTGCGTCGACGCCGTCGGCGCCTTCCAGTGCGTCTGCGCCGTCGGGTTCGAGGGCGTCACGTGCGCGGTGAACTTCGACGAGTGCGCGTCGGCGCCTTGCGTCAACGCGGCGACATGCGAGGACCGCGTCAACCAGTACGTCTGTCACTGCCCCGTCGGCTACGGCGGCCGCCACTGCGACAAGGACCTGAACGAGTGCTACTCGTCGCCGTGCAACAACGGCGGCTCCTGCATCAACCTCATCGGCAGCTACCGCTGCTTCTGTCAGCGCGGCTTCACCGGCAGCCGCTGCCAGCACGGCATCAACGAGTGCACGTCCATGCCGTGCCAGAACGCCGGACGCTGCGTCGACCTCGTCGACCGCTACTCGTGCGCGTGCGCCGACGGTTTCCTAGGCGACCACTGCGAGACGAACGTGAACGAGTGCGCGTCGGATCCGTGCGAGAACTTCGCGCGCTGCGTCGACGGCGCCAACGCGTTCTCGTGCAAATGCCTGCCTGGGTTCACAGGTGCACGCTGCCAGTACAACATCGATGACTGCGCGTCAGTTCCGTGCCAGCATGGCGGAAGTTGCACTGACGGAATTATGGGATACTCGTGCGCGTGCGTGCCTGGATTCTTTGGGCCGAGCTGCGCGGAAACAGGTCGATGTTTGAACGACACCACGCTAGGCAGATATGGCAGCTTTAAATGGCCTACGACACGACATTCTACCACGGTCAACCTGCCGTGTCCATATGGCGCCACCGGAAGTAACGTCAACGGGGCGGCCTACAGACGATGCTCCGTCGTTGGAAATGCGGTTCTGTGGCAGGAGCCGAACTACCAAGAATGCAAGGAATTGGGACAGTCTTCGTCAGAAAAACTGTTAGCGCGCTACAAGCGAAGTACAGCAAACCCAGCCAAGATGACGTCAGCACAGGTCAGCGAGGCGACAGGGGCGATGGAGGAAATTGTCGACTACGCTACCAAATCCCCCGAGTTGGCGGTGCCGCTGATATCTGTCCTCAGTAACCTGATGGGCGTCAACACGTCCGTGATGCAGGCGTCCAACGCCGCGAACAAGACGTCTGCCAGACTAGTCGGTGTAGTGGAGCGGTTCACGGCCGGCGCTGCCGTCGGCAAGTCTGGTCGCCTCGACGTCAACGCAGACAGACTCAAACTGCGGGTGTTGGAGGTTTCTGCAGAAGACGTCAGCAAAGATGTGAAGTTCGCTGTAACCGGCGCCGGAAACCAGGTACACAAGCTTACTACAGTGGTGTGTTGGTGA

Transcript

Protein

KAK2194248.1

MGDDSSAFQIDRGSGVLTTARDIGKALGESYKFYVIVTAGGLSGYSEVVVEVTRKNMFAPTFRQVAYNVYVYRNSAADAHVLAMHATDLDAANYNRKFSYYVTGGRYSSYFRIDASSGELRLAKRLENPPEAFDVAVTVRDTGSPVRETTTIVTVHLSDISAPRSVHAVNVTASSAAICWQRPLHGDVRGYTVVYESVNGTGLTLYTSRNTTDERACTRVLGVKTWDTYRVTVTGRDAWGTPGAQSDEIEFLARNDACSNHACLAGSCTLLPVYPGYKCACSSGYYGYSCEFFNACAVKPCANGGVCRNTSSNAYLCACKTGFWGNNCDKFDPCTTSPCAHGGTCQNTSSSSYTCACREGYYGANCQSYNPCYVAVCSNGGTCESLSEDAYKCTCRAGFYGRNCELVNPCSSSPCRHDGRCYNSSAGTYRCVCREGYYGTQCQWYNPCVTGPCSNGGVCRNTSRGEFSCDCANGYYGETCTRQNLCILSNPCNQGSCDWTGDRQYSCKCKLGWYGRTCADYNPCVTKPCKNAGTCLHYNTMQYICQCTNGYSGKDCEYFNACSSSPCINGATCRNVSSGVFSCNCARGYYGEICRYYNPCSEAPCLNGGVCVHTEHGKYTCVCEHGYSRRDCDYFNACSSSPCMNAATCSNMTSGGFTCRCAPGYYGNACENFDPCALVNCENGGRCLATGDGKKEFQCVCKSGYYGRTCSSYNPCVSAPCASESTCILISNTVFRCACAVGYYGPRCDKFNLCYRNPCENEARCVNTSSMAFRCECQKGYYGKTCAYFNPCVLDVCENGATCVNVSSRNYICRCPSAYYGTNCERRNACASRPCRHFGTCVNTTDGNFRCQCSNGYFGRTCESYDPCTRSPCLNVGSCTNVTNTTYKCACADARLFGSVCQDYDFCAQKPCANNGTCLLRGIRALLDTDRLKTYAVEVAGVVRNVQVENAYACYCTSGFEGFHCDGDVNECASSPCEHGATCDDRINGYRCRCASGYTGNHCQVEVRECSSAPCHNGATCVDLVNMYECVCIPGFTGVQCRWNVDECASSPCLNRATCRDRVDRYDCACAGGFTGVHCETDVNECASDPCRNGASCVDLIDRYMCACPGGFTGSRCEFNINECNSESCAHGGTCVDLVARYRCECVRGYTGTHCQINIDECQSRPCRNGATCHDLVDGYTCHCADGFVGVECHTNVDECASSPCVNGAPCIDRVDGYDCACAAGYNGSACEIDVNECASRPCANAGRCTDLVDAYECACAPGFAGTRCEIDVDECASTPCVNNGTCFDRVDAFTCACADGYVGATCARDVDECGSQPCRNGAMCVDEVAAYRCDCRTGYAGKDCQIDVDECLSSPCSSGATCTDKVDGFACRCAPGFVGALCEVDFDECASTPCRNGATCYDAVNRYSCACVLGYTGANCEQKRKECVTNKCQNGAFCIEHIGSYTCECMPGYTGTFCQIETNECASNPCQNGATCADEVNRYTCSCVSGYNGVTCAIDVDECSSSPCQNEAECVNQVGRYTCRCRAGFTGERCQHNTNECASNPCVRGTCVDGANAYDCKCAPGYGGAHCETEVNECQSAPCQHGAVCHDFLNLYICACPDGYRGVNCELEYDECASNPCANNAACADLTNAYQCRCLPGYTGTNCVRDIDECASAPCLNGAECVDGVDGYTCACRRGYTGARCQRDRDECASSPCENNARCVDAVGAFQCVCAVGFEGVTCAVNFDECASAPCVNAATCEDRVNQYVCHCPVGYGGRHCDKDLNECYSSPCNNGGSCINLIGSYRCFCQRGFTGSRCQHGINECTSMPCQNAGRCVDLVDRYSCACADGFLGDHCETNVNECASDPCENFARCVDGANAFSCKCLPGFTGARCQYNIDDCASVPCQHGGSCTDGIMGYSCACVPGFFGPSCAETGRCLNDTTLGRYGSFKWPTTRHSTTVNLPCPYGATGSNVNGAAYRRCSVVGNAVLWQEPNYQECKELGQSSSEKLLARYKRSTANPAKMTSAQVSEATGAMEEIVDYATKSPELAVPLISVLSNLMGVNTSVMQASNAANKTSARLVGVVERFTAGAAVGKSGRLDVNADRLKLRVLEVSAEDVSKDVKFAVTGAGNQVHKLTTVVCW

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001879	Domain	GPCR, family 2, extracellular hormone receptor domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036445	Homologous_superfamily	GPCR family 2, extracellular hormone receptor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12916	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005112	Molecular Function	Notch binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-