Gene detail

Detailed information of KAK2188172.1 in Ridgeia piscesae Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2188172.1	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	ctg142_pilon	231415	234006	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2188172.1

ATGGCGGCTGCTTCTGACCAGCCCGAGGGGTCGTACTCGGCCGGACGCATCGAGCAGCTCCTACGTTGTCCCATCTGCCTCGACCGCTTCAAGCGCCCGAAGCTGTTGCCGTGCCAGCACACCTTCTGCAAGTCGCCGTGTCTCGAGGGCCTATGGGGCGGCTACCGTCGCACCATCCGCTGCCCCGAGTGCCGCATGGAGCACCGGGTGCCGATCGGCGGTGTCGACGGCTTCCCCAACAACATCACCCTGTCGGGGTTCCTCGACCTGCCCGTCTTGGACACGGTCGCCCGCGAGCCTCCCCGCGCCACTCCGGCGCCGGCGACGACGAAGTGCGCCGTATGCGGCAACGACACGGACACGCGGCAGTGCGTCCACTGCGACAAGCTCGTCTGTCCGCCCTGCCTGCACTCACACATGGCGCAGATGAAGCTCGGCATCGGCCACCTGCTGAGGCAGCTGCGCGACGGACTGCCTCAGCTGACGCGGTCGCTAGACGGCGCCACTGAGTGGGGTGAGCAGACGGCGCGGCGCGTGTCGGCGGCGCGCGCTGCCATGACGACGGCGATCGACGCGAAGGTGCGCGCGCTGCGCGAACGGCAGACGATGCTCAACAGCGAGCTCGACTCGTTCGTGCAGCAGGAGCGCCGAGCGCTGCAGGCGCGCCGCGAGGCCGTCGAGTTGGACGTGGCGAGCGTTAGCAGCTTCTGCGACTCGGCCGAGCGCACGCTTCAGGCGCTGGACGCCAGCGACCAGGCCGACCTCGTCGACATGCAGACACAGTGCACGGAGCAACTGGAGAAGATCCGTCGTGCCGGCACCACGTCGCCACACATCGCCCGGCGCGTCATCTACGTCCAGCAGAACGCCGACCAGCTGCAGGAGAGTATCGAAAGGTTCGGTCAGTTTCAGTTTAACACGGGCGAATCGTCGCCCGCGCACGCCCGTAGCGGCCCGGACGTCACGATCTCTGACGTCCCAAATCCGGATATTTTCTTCGATCTGCCCGACTACGGGGACATCACTGGCAGCGGCACGGGCAGACACGACCCGCCCTTCCAGTCGCCGCGGCTGGATCTGTTGTCGTCAGCGAGCGGCACCAGTCTCTTTCCGCCCATCCGCCAGGAGGCGCCGCCCGTTCCGCGATCGGAGGAGACGCGCGTCGCCGCGACGGGTTCGCCGGAAGTGTTCTTCCCGCCGCTCGCCGTCGAGCCGACGCAGGCGCGCGACCCGCAGGCGCACGTGCCACGGCGCGTGCGCGACTACATGTACGAGATGGACACGTCGACGGATGACGTTCGCGACATCGTGGACGCGATGCGCCGGGAGGTGCTGGGGCCGAGACGCCAGGGCGGCGGCACGCTCTTCACCTACGACGTCCGACAGGTTGACCCGGGCTTCATGCCCGGCGCCGGCGACTCCCTGTTCGAGCCGGCAGGTAACACGGAGCCGGGGCAGAACAACAGCCAGTCGCAGCCACAGGTGGGTGAACGCGTCGACATGGAGGTCGACACAGCTGCAGCGGCGACGACATCGCAAAGCGATTTACCAGCGACGATGTCGCGTGGGCGCACGTTTGTCCAACCGAGCGGCGCTCGCAGTGCCGCCGTTGAGCTTCCGGTCGTAAACAACCAGTCGACGAGCTTCAACATTTCGGCGGACTCCGGCGACGGGGTGCGGAGACGGCGGCGGTATGACCGCGACACGGCCGCCGTCCTCCGGGTTCTGTCCATCTACCAGGCAAAGGGTCGCTCCGATCCCGTCTGCACGATACAGGGCAGCGCCTCGTGTCGCCTGAAGTGGCCACGCGGTGTCGCCGTGTCGCCGATAAACGACTTCGTCATCATCGCCGATAGTAACAATGACCGCGTGCAGGTGTTCGACAGCAACGGCCGCTTCGTGTCGACGTTCGGCTCGGGCGGCGCGGGCGACGGCGAGTTTGACCGTCCGTCCGGCACAGCGGTCACTTCGTCTGGCCACATCGTCGTCTGCGACAGCAACAACCACCGCGTGCAGGTGTTCGACCGGCACGGTCACTTCTCACACAAGTTCGGCAGCGAGGGCACGGACGACGGTCAACTGAGCAGCCCGTGTGGCGTCGCCGTCGACACGTCCGGCCTCATCTACGTGTGCGACAGGGACAACGACCGCGTGCAGGTGTTCCAGGCGGACGGCGCCTTCGTGCGGGTCATCGGCCGCGGCTCGGGCAGCGAGCGGGGCCGACTCCTGCGGCCGCAGTATGTCGCCGTCGCCCGTAACAACGTCGTCGTGAGCGACTCCGGCAACCACCGCGTGCAGACGTTCAACGCGGCGACGGGCGAGGCGCTCAGCTCGTTCGGCATCGAGGGCTCGGCGGCGGGCATGCTGCGCAACCCGAAGGGCGTCGGCATCGACAGGGACGGCTTCATCGTCGTCGCCGACAGCGGCAACAACCGCGTGCAGGTGTACCGCGAGGACGGACAGTTCGTGAGCGCGTTCGGCGGATGGGGCTCGGGGCCAGGCAACTTCCGGGGGCTCGAGGGCGTCGCCGTCACGACGTCACACAAGGTCTTCGTTGGCGACAGAGAGAACCATCGCGTGCAGAAGTTCTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-