Gene detail

Detailed information of KAK2185377.1 in Ridgeia piscesae Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2185377.1	NUCLEAR HORMONE RECEPTOR HR3-RELATED	ctg239_pilon	994402	1003527	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2185377.1

ATGTATACACGGAGAGGCGCGGCAGATCAATCGCCGCTCCTTCTCATCGTAAATACCGCCTCTGTTGGTCGTGCCTTGTTGACCGCTGAGGCAATAGGTCAACCTGTTGTGCACGACCAGCCATGTTGGCCTGTGTCCACTAGCTACCGGCCAGTGTCCACTTTAGGGTTGCTAGTTACTCCAGGCCTTGCTATGCCACTGTCAACAGTCAGGCGTACCTGGCTCGCCACGGGCACATTTCAGAGAAGTCAACGGTGGTCTCCTAGGCGCGTCGAGCGCGACGTCGTGAAGATGCCAGCCGGCGCCATCCCTTTTCCCTTCGGGGATTGCCGCATCTGCAGCGACAAGGCGACGGGGGTCCACTACGGCGTGGCGACGTGTGAGGGCTGCAAGGGATTCTTCAAGCGCAGCATCGTGAAGGGGGAGAAGTACAAGTGCTTCTTCGGCAGACACTGCGTGCTCAGTCCGCAGAACCGCAACCGCTGCAAGGCGTGCCGTTACCAGCGATGTCTTCAACTCGGCATGTCCGTGGAAGCCGTGAAGATGGGACGCATCCCGAAAGTGGACAAGGAGCGGGCCTTAGAGGAACACCGCATGGTGGAGGAAGAGAAGTATCGACAGCAGCAGTGTGATGTCATATCCCCCCTCCATCATCCGGTCAGCGCTCCGATGTCCACCCCACACGCGCCCGACACGTTCTACTACCATATGACGTCACACGGGCTCTCGCCGCCCATCAACGGCCCGATGGACGCGGTAATACGGGTGACTTCCGGCGGCGACCAGATGGCGGCGTTCACTTCCGGTATCGACGGAACGTCCACAGATTCCGGGATCAGTGAAGTGGGTGATGTTATCATGTATCAACAGCAGTTGCAGCAGCCTCACCATCGACAGCAAATGCCACAGCAGCAACAACAGCAGCAGCAACAACATATGACTGGGCATCAGTTACAGGCGACGCTTCCACCAATGCAACAGCAACAACAACAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACATCATCACCATCACCAGCAACAACAGCAGGAACAGCAGCAGCAACAACAACAAGTAGATGCCACTATGTTGAATTCCCCTGGTTCGGAACACTTACAGACAGGATCGCTTGCCCCATCTGCCCCTAGAAACAGGTCGGTTGCCATGGACACCGGAAGGTGTAGCTTGGCAACGCACGCCCAACATTACAGTCCGAACGTCATCAAGGAGTTGATCAGTCAGGTGATTGACAGTGGACACGGCCGACAACTGCAGGATACTGTCCGGCAACTACTGGTCAATCTCAACACAACGCCGGACATCGGTGACGCTCGAGGAGGTCATTCGGCGACCACAACTGAGCCATCGTTCGGTCCTGCGACCTTCCAGCACGTTCACGGCGGCGAAGACTCGACGTCTCCCGACGGCAAGGGCACGAAGAGGAAGTATGACGCCGACCTGTGCGACCACGCCGGGCGCTTCCTGATGCAGCTGTCCGACCAACGCTTCCCGCATCCGGGCGTGGCTCCACCGCAGTACGACACCGTGTCGTCGACGACAGACACTGAGACGAAGCGCCAACGCTGGGAGAGGTTCGTCGCCGAGGCCGTCCCGCGCGGCGCGCACGCGCACGCGCATGCGCACCCGCACGCACCCACAGAAGGCGCAGACTTCCGGTCGACCGGCGAACTTCCGGACGCAGCGAGATTACGCGGGCCGTTCGACCAGCGCGGCAGCGCGCACTTCGTCGACGCCCATGTCTCGGCGCAGTCTCCGCCCGCACGCGATCTGACGTCATTTCCGCTCGACGAGCTCCACCTGGCGACCGCCGAGCAGCGTCTGCACGACCAGTCGCCGGTGAAGCGGGAGACAGAGTCGCCAGTGTGTCACATGACGGCGATGTTTGGCGGCGGCGGTGGTTTGGAGACGTCCATGCTGAATCACGCCATCGACTCGGCCACTTGTGACCCGCACGAGTTCGACCAGTACTTGTATCCGCTGCACGACAAGCCCGCCAGGTGGCAGCACGTCGACGGCGGCGGCGGCGGAAGTCCGCACAGCGCAGACGCAGCGGTGCTCTCTCCCGAGAGCGTCGACGAAGGCACCGTATTGTCCCCTGACGGAGAACAGTGTGCGTGGTTCGGTGCCACTCGCAAGACGGCGCCACACGAGACGCCGCTGCCGTGTTTGAAGCGGGCGACGGAGGCGCACCGACGGCACATTGAGGAACACATGGTCGTGCTGGCGGCTGAGTTGACCGGACAAGAACCCGTGCCCCAGCTCAACCGGATCAGTCGCTCGAGTCGCCGCCAGGTGGAGTACATGTGGAACCAGCTGCTGACGCAGATACCGCAGATCAACGCCATCATTACAGGCCTGTGCTACGACATCCCGTCCTTCGGCAGTCTCAAGTCTGAGGACCAGACCGTGCTGATGGAAGGCGCCTACTTCGACATCTGGCTGTTGGCCAACTCGAGCCTGCTGCGAGACGGGGAGTCGTACATGCGTATGCCGTGCAAGACGCGCTACACACGCTGGTGGATGAACCATTTTCTGCCGAAGCCGCTCGTCGACGACATCTTCAGCTTCACACACGCCCTCAACGACCTCACGCTCACGCCCGTCGAGCTCGTCATCCTCTGCGCCATTCAGCTCACACTACCAGGCACGTAG

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	GCNF-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00105	zf-C4	Zinc finger, C4 type (two domains)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR001628	Domain	Zinc finger, nuclear hormone receptor-type	Interproscan
IPR013088	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45805	NUCLEAR HORMONE RECEPTOR HR3-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0004879	Molecular Function	nuclear receptor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-