Gene detail

Detailed information of KAK2178612.1 in Ridgeia piscesae Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2178612.1	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	ctg538_pilon	657130	680707	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2178612.1

ATGCTGACGTTACAAAAGTACAAGAGAAAGCCAGGCGATGAGGACCATGAACATACCAAGCCTCCGAAGTACATTTTCCTTGAAGGTCAAACCACCATTGGTCGGGGTTACAGCAACAACATCCAGCTGCTGATGCCGTGGTTGAGTAGGCAGCATGTCATGATATCAGTGGTTGGTGATGAACATTTCCTGGAGGTCATTGGTAAGACGGGCGTGTTCGTGAACCAGTGTCGAGTGGTATGGGCGGTACTCAAAGACTTTGATGTCATTACCATCACGACAAAAGCCTTGGCGTTTTGCAAGAAACTGCCTCAGCATGCTGGGCCGTTTCTCTCCTACACCTACAGCCACAAACGTCACAGTGTCCCTGACGTGGAGAATGTATATAAATCTCCGGTCAGTTGGTCCGACTTGATAAGCGTGTCGGAGGAAGTGGACGGGAACGTGCTGAACGAAACCTATCACGTGGAGGATTTCAATTGCACACCTGTGGACGTGGAAAGCAAGCCACATGTCAGGACAGCAACAGACACAGCAGACATCGCTGGTGTTTCCTCGAGGCTCACTGGTCATACACACAGTGATACAACACACACACAGACACATACAACAGAGGCTGGTATTCACACCAATGGGCAGAATGAGCCCGGTGCTAAGCCTGGGCCAAGTAAGGTACATCAAACCCGAGCCAATGGGCAGATCAGGACTGATGCTACGCCTGGCCCAAGTATGATGCATGAGACCCGAGTCAATGGGCAGATTAGGGATGATGCTAAGCCTGGCCCAAGTAAGGCACATCAAACCCGAGCCAATGGGCAGATCAGGACTGATGCTACACCTGGCCCGAATAAGACAGACCGAATTTGTGTCAGTGAGCAGAACGATGTAAAGCCTCGCCCAAGTAAGACAAACAGTCGGGTAGGTGAGGTTGAGAAACCAGTGACGAGGCAGAGAGGTAAGGCTAAACGCAAGTATGTTAGTTATGACAGTGACTCGTTAGAGGATGACGACTCGCAGACGGAGTGTGTCCCGCCAAAGCTGGCAAAAAAGAAGACTCCTGCCAGCAAGGTGGACCTGGGTATCAAATGGCAAAACACAAGAGTTGGCAAGAATAAGACGAAGGCGAACAGGAAAGCACAACAGGCAGAGTTGGTGCTTGTGGACAGATGGAAAAGGTCTGATGTCAGAGTTCCTAAGCCCAGGATGGTGACGGCCGTGTCTGGATGTTACCACAAGCATTATGTCACATTCAAAGACAAGGAAGTATTCAAGGTGGAGTTCAACTCTGAAGGACCGTCAAACCAGTGGGATATGACAGAGCTGGACGTCAACGTCACAGTTAACATGGCGTTGCTTGAGTACAAGTTGCTCCGTGGTTTACTCGATGCGGAAGATCTGCAGTGTCTCTTTAAGATCGTGCGTAAGGAGACCCGTAAAACAGACATGAGGGACTTTGACAAGCCCCATGCACCTGATGATGCCATCGTGCCGGCGGAACAGCCCCCCGGCATAGCCCTCACCCTGAAGCAGTACCAACTGAAGGCACTGGCATGGATGACAGGGCTGGAGGAACACGTCGGCACGGAGTGGCTCGTCTCTCGACTACTCAAGTGGGAGGGTGTGAAATGCAACTTGTTGTTTGACCTGAGCAAGGAGCGGGTCTATTTCCCCCCTGTGCCGCCAGCCGACTCGACCTCCCTCAAGGTGCACGCCAAAGGAGGCATCCTCGCAGATGAGATGGGTCTGGGAAAGACGATCACAATGTTGGCCCTGATTGTTTCCCACAAACCCAAAGACTTCCCTCGAGTACCGGACCCTGATGGGTTTGAGTCACAGACCAAGTATCGGCTGCCGTGCTGGACCACTCTGGTTGTGGCACCAAGTCACCTGACAGCTCAGTGGAAACACGAGACCGAGAAACACGCCCCAGGCTTGAAGGTCCTGCTCATCACGACAAAACCACAGTTTGAGAAGTTGTCGTACTTGGACATCTTGAAAGCGGACATTGTTGTCGTGTCGGTGCAGTTCCTTCTCACAAACAAGGCTTACACAACAATGGAGACAGGCGTCAGTGCAGAGACATCCTTCATCAATCTGATGCGCAAACCTGGGATAAATCCACTGCTCTGTAAAGCCCCAAACCTCTGTCATTTTGAGTGGTGGCGTGTCGTGTGCGATGAGGGTCATGAACTGTTGACCTATGACACAAAGCATAAAGCGAAGTGCACACAGACTCAGCCCAGTGTCGGTCTGACGACACTGGAGAAGCTGCATTCCCGCCACCGGTGGTACGTCACCGGCACACCCTTCCCCCACCAGCACAGGAGTCTACGTGCCGCCCTCAAGTTCCTGGAGTTTTCTGTCGATGACCCAATGCTGGTCCACACAGACGGCAGTCTCATGGTCGACCCATCTGTGGGAGTTGAGAACTTTGTCAACGTTGAGCTGTGTTCTGGACCACTCTGGGAGCTGGTGCATCATAACTTCTACATCCGACACACGAAGGAAAGCATCTGCGGAGAGTACGACGTCCCCGAGTACATAGAAGAATTGCTGCTGCTGACAATGTCAGACGTAGAACGGGGCATCTACGATCGCAGTGTCAACGAGCTGGAACGGCGACAACTGTGCTGCCACCTACAGATTGCCACGAGACTACAGCAAGTTGTGGGCATTCAACAGAAGTCGCTGGATGAAGTGAGAGTCGCACTCATCGATCACACGCAAAAGGTGTGTGTAGACCACTTGTCAGCTTCTTTGTTAATTCTAGGCAACTTAGATATTTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00498	FHA	FHA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000253	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR050628	Family	SNF2/RAD54 Helicase and Transcription Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45626	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-