| Gene ID | Annotation | Contig | Start | End | Strand |
|---|---|---|---|---|---|
| KAK2178433.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | ctg544_pilon | 142366 | 171590 | - |
| CDS | |||||
| KAK2178433.1 | |||||
| Transcript |
| - |
| Protein |
| KAK2178433.1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|PHD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00176 | SNF2-rel_dom | SNF2-related domain | Domain | Interproscan |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF00385 | Chromo | Chromo (CHRromatin Organisation MOdifier) domain | Domain | Interproscan |
| PF00628 | PHD | PHD-finger | Domain | Interproscan |
| PF06461 | CHDII_SANT-like | CHD subfamily II, SANT-like domain | Domain | Interproscan |
| PF06465 | DUF1087 | CHD subfamily II, DUF1087 | Domain | Interproscan |
| PF08073 | CHDNT | CHDNT (NUC034) domain | Domain | Interproscan |
| PF08074 | CHDCT2 | CHDCT2 (NUC038) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000330 | Domain | SNF2, N-terminal | Interproscan |
| IPR000953 | Domain | Chromo/chromo shadow domain | Interproscan |
| IPR001650 | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR001965 | Domain | Zinc finger, PHD-type | Interproscan |
| IPR009462 | Domain | CHD subfamily II, SANT-like domain | Interproscan |
| IPR009463 | Domain | Domain of unknown function DUF1087 | Interproscan |
| IPR011011 | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR012957 | Domain | CHD, C-terminal 2 | Interproscan |
| IPR012958 | Domain | CHD, N-terminal | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR014001 | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR016197 | Homologous_superfamily | Chromo-like domain superfamily | Interproscan |
| IPR019787 | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR023780 | Domain | Chromo domain | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR038718 | Homologous_superfamily | SNF2-like, N-terminal domain superfamily | Interproscan |
| IPR049730 | Domain | SNF2/RAD5-like, C-terminal helicase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45623 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000122 | Biological Process | negative regulation of transcription by RNA polymerase II | Interproscan |
| GO:0000785 | Cellular Component | chromatin | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003682 | Molecular Function | chromatin binding | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006338 | Biological Process | chromatin remodeling | Interproscan |
| GO:0016887 | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0042393 | Molecular Function | histone binding | Interproscan |
| GO:0140658 | Molecular Function | ATP-dependent chromatin remodeler activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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