Gene detail

Detailed information of KAK2165537.1 in Ridgeia piscesae Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2165537.1	CRUMBS FAMILY MEMBER	ctg1362_pilon	124876	143040	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2165537.1

ATGACTCTGAACGGCAGTCAGCACTTCACGCTGCTGACTGAAGACATGGACGAACCGAGGGACATAGCTCTTGACATCGCACGAGGAATGATGTACTGGACGGACAGAGGAAAAGTTCCAAAAATACAAAAGGCATCCATGGACGGCACAGCACGCAAAACTGTTATAATATTTTCTTACTCGAGCTGGCCAATAGGTTTGGCCATAGACCATGGAGGTGAACGACTTTACTGGTGTGACCCACTTACCGACACAATTCGATCTGCAACATTTGAGGGCAAAGATGAGAAGACGTTAATTACCAGACAATCAGAATCACATATTTTCGGAATAGCTTTCCTAGGCATGAACTTGTACTACACCGATATGCCAAACCATGACGTCTCAAAAATCAACGTATCTCTCCCAACACCGATACCCCAGCGAGTTGGAAGTGCTACTTTTCAACGTCCCAGTGGCATAGCAGCGTACAGCAGTGAACAACATGCCCGCGACGAAGCATGGAGTAGTCCATGCAGACGTCACAACGGTGGATGTCCATATATTTGTCTCGCGACACCGATGGGACCTCGGTGCGCGTGCCCAGATGGACTCAACTTCGTCAATGAAACTGAATGTTCACCACCTCCCTATAAGTGTCCACAAGAACACACCGACCAGCAAGGCCGCATACGAAGTCCCGGATACCCTGGCTACCGAAATAATCTGCACTGTGTGATCATTGTGCGCTTGAACAACACCATAGGACATGAACGCCGGCTCCAACTTTATGTGGTCGAGTTCAGTCTAGAACCCGTATATGATTACTTGGTGATTGGGAAGACAAAGGTTCCTGGACTACAGACAGGTGCAACCTACACAGTGACTACGACAGATAGAGACTTTAGATGGTTGTTCGTCACTGACGGATCCGTAGCCCGTGATGGGTTCAACTTCCAATACAAAGTTGTGTATTGCAACAGCAGCAAGCCATGTGTGAACGGAGGAACCTGTATTCGTGGCGAAATATGCCAGTGTCTTAACGGGTTTGAGGGCAACTGGTGTGAAACACGGGTAGAAAGCGTATGCCTTTCAAACCCTTGTCAGAATGACGGGGAATGCAAAGTCGAAACGTCTGGCTATTCATGCAAATGCCACATCGGCACTTCGGGCGAACACTGCGAAATAGGCTACTGTGCATCTATCACGTGTCAGCACCAAGGGACCTGCTTTCTTACGGTCTCAGGACCGATCTGTCAATGTGTAAGCGGATACATAGGAAAGCGCTGTGAAGAAGAGGTGGTCGAGTGTGCCAGTGAACCGTGTAAGAACGGCGGAACATGTGTCGATCAGGTAAACCGTTTCGTCTGCCGCTGTGGAGATTTCTACAAGGGCAGCACATGCGAATTCGACATGCATACATGTCAAAGCAATCCATGTTTGAACGGGGGCAGTTGTGACAACTTGTTCGATGCCTACCGATGCAAATGCGTTGACGGCTTCACCGGTGACATATGCGAATCACATTTGCCTTGTGCGACTGACACGTGTCACAATGGCGGCACGTGCGTGGACACCAGCACTGGACCGTCGTGTGTGTGTCCACCTCATCGTACTGGGAGGCGCTGCGATCGAGTGAGCCTGTGCTCGACGACGCCATGTCTAAATGGCGGAACCTGCAGTGAGTCGAACAGTGTACGAACTTGTAGATGCGCCGCCGGGTTCTCTGGCGACAGCTGCGAATTGAGTCCGATAGCGAATGTGCCGGATTCAGAAAAGACGCGACTGCATATTACAATAGGATTGACAAACGCTGACTTCACAGAAACGCTGCGCGACAAGGATTCTGTTGAATACAAATCGTTCGGAAATAACGTGGTGGAAGCCCTTCAAGACATCCTTGACAATACATTGGAGCGTGGAAAATATGACATAGTTGATGTCACGTTCAGCCCCGGCTCTGTCATTGTTACCTACGAAGTAGAAACAATAAGAGATGGTGTTGACCCGTCTGCCATCACTGCGGCCCTCCAGGAACACAGTGGCACCTTCGCCGGACACGACATGGATCAAGACTCCGTGGCAGTGTCTGGTGGGTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR000082	Domain	SEA domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000859	Domain	CUB domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR036364	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991	Cellular Component	protein-containing complex	Interproscan
GO:0045197	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-