Gene detail

Detailed information of KAK2163368.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2163368.1	BONUS, ISOFORM C-RELATED	ctg81_pilon	775670	777721	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2163368.1

ATGTTTCCAATTGCAGAGATAGGCAGAATGTCGTCTACACTGGTAGAGACAGTGTCTATAAACTATGAAGACTTCAATGACAGTTTTCTGACATGTGGAACCTGTCTCTGTATGTTCGATGGGCAAGACCACACACCAAAATTGTTACCATGCTCGCATACAGTTTGCCGTAGCTGTCTAGAACACATCATCGAGGCACAGGGAAGAAATCCAACAACATTTCGGTGTCCAATATGCCGTGACACAATCACCATCCCTCGTGGTGGTCCATCATCATTCCCTCCTAGCTTCATTGTTAACCAGCTGCTTGACCTAATGGCACGCCAGCGGCGAGACATCATTCCCAAGTGTTCTGACCACTCACAACAGGAACTCATGTTCTGTGAGACATGTGATACGGTCTTCTGCATTGATTGTACTGGAGGTTCACATAATGGACGTGGGGCAAGTGCTCACACGGTCATCCCATTTTCTATAGCAATAAAAAGGATGTCGGAGATACTGCTCTACAAGGCTAGTCTCTGTATGAAGAACCTTAACAGTGCATGTGAAAATGTTAGCAAAGAAATGGACAGGCTTGATATCAGTGCTGAACTGTGCATAGAAGCCATCAGCAAGACTTTCCAGGATCTGATGAACATTGTAGATCAGCGTCGCCATGATGTCATCACAATGGTTAGGAATATACGTGATGACAAAAAGCAGATACTGAAGGAACAGCTTGACATCATTGAGTTAGAAAAAACCAAGGTGCAAAGTGACTGTCAAGGCCTGCAACACCAGGTTGAGGTACGAAACATCACAAAACGTATCAGTGATCTCAATGAGAAACTCGACATATCAAGCACCCTGGCAGAGCCAAGGGAAAATGCCTACATGAAGTTTGAAGTGAAACATAACAGTGCTTTGAAGGATCTGCACAATGTGTTGAATAACTTTGGACGCATTAGAATTAGCACCACTTTCCCAGCTCTCTGCACTGCAAAATTAGATCCTTTGGGTACCCACCTCAAAGCCACGGTCACTGTGACTACAGTGGATTACCATGGTAATCCAAGAACAACTGGCAGTGACCCAGTTATTGTGCAGCTTAGAAATGAACAAGGCAAGATAGTTTCAACTGAGATGAAGGACCATGACAATGGTGTGTATACAATCACCTTCACACCGCACACTGCAGGTCGGCATAAACTTGACATCACTATCTTTGACCGACCAATCAGAGAAGGCCCTTTCTATGTGGAGGTAACCAGTCACAAAAACCCTTGTGCCAGGTTTGGACGTCGAGGCAGCGGTCCAAATGATTTCATTCAGCCAATTAACATCGTCCTTGATGTAAACCAATTGCTGTATGTATTGGATACTGGCAACAGTCGCATAAAAATATTGGATTTGCAAGGAAATTTCATCAGACAGATAGAACAGCATGGGTTGGAGCAGCGTGGAGGCACAGGACTCACTCTGACACCTGCAAACACACTCATGGTTGTTAATTGGCGCACCAAATGTGTTACAGAGCTGACAATAGATGGTATTGTCATCAACAAGTTTACCTGTTCAGACTTTGAAGAACCAGTGAGTTTAACTGTAAGCAAGGATGGAGATGTGTTTGTGGCAGATAATGGCATGAACCGAGTGTGGGTATTTAACAGACAGGGTAAGCTCATCAACACAATGGGTGGAAAGGGTGATAAAGATGGACAGTTCAGACTTATTACATCAATGTACACTACACCCAATAATGAAATAATTGTTGTAGATAATCGCATTCAAGTGTTCTCAAGTGCCGGAAAGTTTCTCTACAGAATATCCACTGGCGCACCTATCAGGGGTCAGTATGGTGGAATTACAGTTGATCGCTATGGTAATTATCTAGCAACACACCAAGGCAAGTCAAATGTGCAAGTGTTTAGTGCAAATAGAGAGTGGGTGTTTGACATAGACAGTCATGCTGACAAGTTAAAACGACCGAGTGGCCTGATCACCTTCAATGAGCATGTCTATGTTGTGGATTTGGGAAACGACTGTGTGAAGAAGTACAGGTATATGTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-