Gene detail

Detailed information of KAK2159771.1 in Ridgeia piscesae Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2159771.1	UNCHARACTERIZED	ctg1691_pilon	47888	133371	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2159771.1

ATGACTACTACCGGTCTCGTGGTGCAGTTGGCACGGGACTTACAGAGTGACTTCTACCCGTACTTTGATCGGTTCTTTGCTGTCATCGTGGCTCTGCTGCACAAGTGTCATCACCATGTGGATGTCCTAGAGCAGGCCTTCACGTGCCTCGCCTACCTCTTCAAGTTTCTCTGGCGACTCATGGTCAAGGACATTCAGCGTGTGTACACGTTGTTCTGTCCATTGTTAAGCAGCAAATACCAGGAATACATCAATACATTTGCGGCGGAAAGCTTTGCTTTCCTCATGAGAAAGGTGTTGCCAGTGTTGCTGTCTAAACTCGGCTCTGCATCTCTGAATTATGACCTCGTTCTCGAAGCGCTGGTCCACACGTGGACTTTGATGGCGGACCACACCACACCGCAACACTCGCTGTGTGTGTGGTGCCCTCTATTGATGCTGTTGAAACAGTTGAAAGGAGACGCCATTCACAAGTCGTCATTGGTGCTTGATATTGTAGCATCTCTTCTCTTAGCCACCAGGTGTCCCCTTGCTCCACAACATCGGTCAAGCCTCATAAATGCGGCATTTAGCAGCAGTTACAGTCGCAGGGAGGTGTTTAATTTCATCAGACGTCTCTTTGGACTGCCACTATTTGAAAAGGACCTGCTGCCTGCGACCCTGCGCTACTGTCACGACTGTGTCATGAAGATTGACTGTGTCACCACTGGAGGTGACAGCCCCACGGAGGACGTCTTGTATTTGTTGCTGGCCCTGCTACAGCACAAGGTGCCGACAGAGGGTGACAGTCAGACCCCTGCTGGATACCCCCTTGACTTCACCCCTGTCATAAACAGAGGACCAGCATCAACCAGGCACTCGTCCAGATCATTCCCTACTTGGGTGGTCAGTGAACTGGACCGACTGAGTGGTCAGTTGTCAGACTTGGACACACTGTGGGCCCTCCTACATTGTCTGCCCCACCTCCAGCCACTGGACACTGTCCTGGCACTGGACAGTTTGACCAAGGTCTTCACACAGCTGCAGATGAAGTTAGGAGATGACCAGTTGTGTTGTCCACCCTCCGTCATCAAGTCGAGTCTGTGTGTGTTGTTTGAATGTCTCTCTACACTGCACCAACTACATGAGTCAGTCACCTTCTACAAGACTGTCTCCCTCACCTTCATCATTTCACTCGTACGTGTGCCATGTCTGAGGGTTGCCCACCTGTACTTCAGCAACGCTGATGGTGACACGAGGAATGATCTCCTCTCTGAAGACACTTTCAGACAGCTGTTTCAACCAATGCAGGAAAACCTGTCGTCACCATACTCACAGGTCCGGCAGCTGACGCTGGAGATCTTCTGTCAGTTCAGTTTACCTATGCCCTGTCTGGACGAGATGCAGGGTGTCTCCCAGCCGGGTGTGTTTCGGATCTGTCTGGAGGCAGAGCAAGTGCCCCTCAGTGTCCAGACGTCAAGGGACAAACTCTTGCATATACGCAAGCTGGACGCAGACGTTGTGGTCAACCAGCTGCCCCTTGGGGCATACAGCCAGGTCATACAGCATACGTCTGTCTCTTGGGCCATACAGTCAGGTGGCACTGCGATACCTTCTCGGAATGTCCGCGTCAACTTCAAGATGTTGTGGCAGCCTGTGATGGAGCTCATCAAGTCACATGCCGATCACATGACCCGGGAAGAATTCTGGGATCCAAAACAACACGGCAGGCGACAGAGTGTGACCAACACGAGTCAAGTAGAAGACAAGTCTGATGATAAAATGACCTTCGACCTGTCCGAGTTGTTTGGTCACTACCAGGTGGCGCTGGTGAATCAGACGGAGAACCCTGACTATGCGAACGTGCGACAGTTGTTGTGGCAGACGATGCTTCTTTTCCCGGGCATCTGTGAGACAAAGACCCGCATCATTTCTCCGCTTCTCTTCCGGTTTATCGACAATGAGCATCGACCGACGGACATCAACGTGGCCCAGATGCAGGACGTGCGTCGCTGTCAAGGTGACACGACTAACGTCGATGTCAATGACACTCAAGATGATGATGATGTCGTGGAACCAACTGACCAATCAGACGAGAGTGCAGTAGGCACAGAATGGAGACGGGCATCAAATAAGACACTTGTGGTTCATCTGACTCTTTTCTCCAAGTTCAAGCAACCCAAGTCGGTTTACTTGGAACCCAAGTTGTCATCCCTCTATTATGACTTACTGCAGCATCCTGACGGGTCAGTTCAGAAGGTGGCATTTGATTGTATCATGACGTACAGTCACAAGTGTCTCACACCATACAGTGAGAACTTTGAGCGACTTTTGGATGACAAAAGCTTCAAGAATGAGCTGGTGATGTTTAGCATTGCTGAGGAGAACTCGATCATCCTCAGTGAACATCGACCAGGGCTGATCCCAGTCCTCATGAGACTGCTGTATGGCAAGATGCAAGCGAAGTCCGGCAAGGACACGGCAGGCCACAAACATGTCCAGATGCGCAAGAACATGATCCTAAGGTTCCTGGCGGGGTCGCAACCCGGCGAGGTCAAGGTCTTCCTCGACCTTGTCTTCCACCCCTTCCTACACCTCGTATCAGATGATGTCAACACAAAGGTGAAAGAGCTGACAGATCATGTCGATCTGTCACAGATCATTCCCATCAAGAAACAGCAGGGTCTCATTGAGGTCTACCTGCCCAATATCCTTCACATCCTTGTGTGCCTCGCCGCACTGTGCACACGCATGCTCGAGCAGAGACACCTGGTGGCAACGGGAGTAGTCAACTCGCTCAAGTCATTGCGGGCAGCGTTCATGACTCGCATTAATCAGTTCTTCCAGTCGTTCCTCACCTATCCATACACAGCCAGCGAGGTGGACGCCATCTTCACGGCCCTTGTCTGGCCACAGGTGACAAAGTTGTCATATGAAGGTGTCTACAGTCCCACCAGTCTACTCAAGATCTTTGTCACGTGGAGTGGACAACCAAGGTACCTCCCTCTACTGGCCAAAATGAAATCAGCTGAGGGTGAAAGCGATGTGGTCAGCCCTCTGCCATTTGTCTTTGAGTTGCTTCTGGCTAAATCTGTCAGCACTGGCGTCATCGACGCCATCATGACACTTGTCGAGAACTTGCTGGTAACAAGTGACTTCAAGGTCACCGACGATGACAAGGTCATAGACACCGGGGTCATGATCAACGTCGACAAACAAGGGCGTGACATGTCGTATGGCACGGCGTTGCTATTGCCACACGTGCCAGCAATCCTGCGACATCTCAAGGGCGTTGTCATGGCGATGGCGGCCCCCAGCATGGGAAAGAAGAAGACTATTCCGGCACGAGAACTCAACATCCTCGCACGCGCCGACCTAGTGCGTCTCCTGCTCCCATTCCTCGGTCGACGACTCAGTCGGAGCCTCACTGTGGAGGCGGACGTTCTCACCGCAGTGAAACACCTCATCTGCCAGGTCAAGGTCGCCACTGAGTTCATACCCACAATTGCCCATCTGTTCTCGTCTCTGGCGGCCCGGTCGTCACGGACACATCTTTGTGACGTGCTCAAGTCGATTGCTTCAAAGGAACCATCGATGGATGTCACGTCAGAGGTCATCACCAAGTTGAATGCGTGGGACTCGAGACGAGTCGATGAGCCCGACTACCTGCAGAGGCTGGATGCATTCCAGCGAATACGAACCCTGCTCGCTGAGAAACACTCACCAGATGTCACTCTTTTGCTTATGCTCGTTCATAACTGTGTCTTCTTCATTGCCACGTCAGACGATTTGTCGCTGCGAGATAGTTCTAGTGACTGCCTCAAGGAGGTCCTGACACAACTGGCGGCTGATAGCAGTGACAGTGCTGCCCACCAGAGGGCACTGTTTCAGACGGTCGTTCTGCAGAACCTGCTGCCGGAAGTGAAGAGAAACCTGAAACTGAGATCGGAGCCACACCGGCGGGGCCGAGCGCTGCGTCGTTTGGCGAAGCACCTGGCAGTGACGAGGATGAAACGTGACACTCTGGTCTCCTACCTGCTGCCCATCGTCACGGCGTTCCTGCGTGACGATTCGGCTGCAAAACACCACAATCTTGTGGATGCGGCTGTGGACGCGGTCGGAGTCATCTGTCGTTGTCTGCCCTGGCCCCGATACCTCCTCATCCTACAGTACTACCTCAACCAGCTGCCTCGGTCACTCGACAACCAGAAACTCATGGTCAATTCATATATCGGTGACAGTTTATATACTGATGACACATCAGCGAATAAGAAAAAGTTGGCGGAACCAGGAAAGGAAATTGCGACAACTGCTGAAGAAAAAGGGGAAAAAGAGGACACCAAGGAACAGCCTTTGGGGAACGAGGGAGAGGAGGAGATGCTGAAGGAGCTGGGAGATGAGGAGGAAGAGGACGAGAAGGGAAAGACGAAGTCTGATGATGAACACAAGATGGCGAAGACGAGCAAATACGCGGAAGACGATGAGATCCTCAGAGTTCCCATTGCCCTCGCCATGTCGCGGGCCCAGGACATCCGTGAAACGTCACGTGACACACTCATCAAGATCGTCCAATCACTCGGCCCCAGCTACTTCTCCTTCGTACTCAAGGAGCTGCGTGCATCCCTGCTGAGGGGCTACCAGCGTCACATCCTCTCCTACACTGTGTGGTCACTACTCCGCAACATGAGTGGTCAGCTCAAGGCTGGCGACCTTGACCCCTGTATACCCTCGCTGACCGAGGGCATCGTGTCCAAGTTGATGGAGGCTCGCAGCAGCAAGAGTTATGAGTCATATAGACTCGTGGCCAGACTCGTCAGTAAGACCTCACTCGCACTGCTGGTTACCCCCCTCAAACAGATCGGTCAAGGCCTAGTGGACAACGACAGTCTGGCCGTGGACGCACTGCTGACCTTCGTGTATGCACTCACCAAGGAGGTCCTACCTGGCCTCCAGGTGGCACTCAAGGTCACAGACACTAAGAAGACTGATTCCGAGACACTGAGACCCCCGAATCAGCTGCTGCTGAAGCCAGAGCCCCCTAGGGGCGGGAAGAAGCCAAAGACACATGTGAAGACGAACGTCTCGATCATCATTGAGTTCGGACTGCAGCTGTTGTACCTGCTCTTGAAGAAGGGTCTAGTTGGAGGGGTCAAAGTTGAACACCTCAAACTGTTGGACCCTTTCATTGCTACACTCACGGCATGCATCGAGTCTAAACATGTCAGGGTGGCGACAGCGTCCATGCGATGCCTCGGGTGGCTGCTCAAGTTTTCGCTGCCCGCCCTCAAGAAACACATCAAGAAAATCACCGCCCACTTGTTTGTGTTGCTAAGCAACTACGCAGCAGCTGGTGCCGCCAAGGGAGAGAATTTTGAACTGGTCGTTATGTGTTTTAAGACAATGACAGTGCTAGTGAGAGACATCAAGTATCACAGTATCTCAACGGAGCAGCTGCAAGTGCTTCTGGGATACGTGGAGCAGGACATACACGACTACACGCGGCAGGCGACTGCCTTCTCACTGCTCAAGGCCATACTGTCGAGGAAGCTGGTTGTCGCCGAGATTGAAGAAGTGCTGCATAAGGTGGAGCAGTTGTCAATCAAGGCTGAGTCACCACATGTCCGTCTGCAGTGTCGACAGGTGGAGATGCAGTTCCTTCTGGATTATCCGCTCGGCAAGAAGCTGCAGCGCCATCTGGAGTTCTACACGCTGTTAGCAGAGTACGCCGGGTTCTTCTTCATTCCCCTGGTGAGTCGACTCACGAGTGACGAGTCGCCCAAGTGTCGCAAACTCACAGCCCTCGCAGTGAAGTGTCTCCTTGGGAAGAGTCAGGACACAAGTGTGATGGAAGACAGACAGCTGGACCTGTTGCTCTTCAACGTAATCACCCTACTTATGAAGCTGTCCCGGGAATGCGACATCGTCCGTAGTCCTCGCTGGACCGGAACCCTCAACAACATCTGGGGTCATCTGGAGACTCATCTGCTCCACCCCCACGCCTGGGTGAGACTGGCCAGTGCCCAGATGTTTGGTATCCTCTTGGGGGCCTGGACAGTGGACGAGGTCATAGCAAGGTCATCGGAGGGGTCATCAACGGATCGCAAAGAAAGGTCCTACATTGAGACCGACCTTGACTCTTGGGTGTACACATTATGTGGGTCATTCTGCAAACAACTGACAAGTCCACAACTGGACACGGAGTTGGCTGAACAGGCGGCTGACAATATGACCTTTTCAACTATGATCAAATATCGACGCAGCTTAGCTGCCGTCGTCCGCGCACTGCAGCAACAGCGCGCCCTAGTGTGCACCGCCGGCACTAACGCCCTCCACAACCAGCAACAGGCGGCGCTGCAGCGCGTCCAGCCCGAGTGCGTAAGCGTAGTACCGTACCGAGAGGGCAGCACCAGCAAGGGGGCTGTGACGAAACGGAAGCCGTATTCGCCGTTCACGGGCAAGAGCAACGCGCTGGACTTCACGCTAGCTCGCGCCGATGACCTGGTCAACTGGGCGCGCAAGAGCTCACTGTGGCCAATGACCTTCGGCCTTGCCTGCTGCGCCATTGAGATGATGCACTTCGCCGCGCCGCGCTACGACATGGACAGGTTTGGCGTCGTGTTTCGGGCCAGTCCGCGACAGTCCGACTGTATGATCGTCGCCGGCACTCTCACCAACAAGATGTCGCCGGCGCTGCGGAAGGTCTACGACCAGATGCCCGAGCCGAAGTGGGTACTGTCGATGGGCAGTTGCGCCAACGGCGGCGGGTACTACCACTACACGTACACCGTGGTGCGAGGGGTGAACCGCATCATCCCTGTCGACATCTACATCCCCGGATGTCCACCCTCCGCCGAGGCGCTGCTCTACGGTATCTTGCAGCTGCAGAAGAAGATCAAGCGCATGAATTCGATCCAGATGTGGTACCGGAAGTAG

Transcript

Protein

KAK2159771.1

MTTTGLVVQLARDLQSDFYPYFDRFFAVIVALLHKCHHHVDVLEQAFTCLAYLFKFLWRLMVKDIQRVYTLFCPLLSSKYQEYINTFAAESFAFLMRKVLPVLLSKLGSASLNYDLVLEALVHTWTLMADHTTPQHSLCVWCPLLMLLKQLKGDAIHKSSLVLDIVASLLLATRCPLAPQHRSSLINAAFSSSYSRREVFNFIRRLFGLPLFEKDLLPATLRYCHDCVMKIDCVTTGGDSPTEDVLYLLLALLQHKVPTEGDSQTPAGYPLDFTPVINRGPASTRHSSRSFPTWVVSELDRLSGQLSDLDTLWALLHCLPHLQPLDTVLALDSLTKVFTQLQMKLGDDQLCCPPSVIKSSLCVLFECLSTLHQLHESVTFYKTVSLTFIISLVRVPCLRVAHLYFSNADGDTRNDLLSEDTFRQLFQPMQENLSSPYSQVRQLTLEIFCQFSLPMPCLDEMQGVSQPGVFRICLEAEQVPLSVQTSRDKLLHIRKLDADVVVNQLPLGAYSQVIQHTSVSWAIQSGGTAIPSRNVRVNFKMLWQPVMELIKSHADHMTREEFWDPKQHGRRQSVTNTSQVEDKSDDKMTFDLSELFGHYQVALVNQTENPDYANVRQLLWQTMLLFPGICETKTRIISPLLFRFIDNEHRPTDINVAQMQDVRRCQGDTTNVDVNDTQDDDDVVEPTDQSDESAVGTEWRRASNKTLVVHLTLFSKFKQPKSVYLEPKLSSLYYDLLQHPDGSVQKVAFDCIMTYSHKCLTPYSENFERLLDDKSFKNELVMFSIAEENSIILSEHRPGLIPVLMRLLYGKMQAKSGKDTAGHKHVQMRKNMILRFLAGSQPGEVKVFLDLVFHPFLHLVSDDVNTKVKELTDHVDLSQIIPIKKQQGLIEVYLPNILHILVCLAALCTRMLEQRHLVATGVVNSLKSLRAAFMTRINQFFQSFLTYPYTASEVDAIFTALVWPQVTKLSYEGVYSPTSLLKIFVTWSGQPRYLPLLAKMKSAEGESDVVSPLPFVFELLLAKSVSTGVIDAIMTLVENLLVTSDFKVTDDDKVIDTGVMINVDKQGRDMSYGTALLLPHVPAILRHLKGVVMAMAAPSMGKKKTIPARELNILARADLVRLLLPFLGRRLSRSLTVEADVLTAVKHLICQVKVATEFIPTIAHLFSSLAARSSRTHLCDVLKSIASKEPSMDVTSEVITKLNAWDSRRVDEPDYLQRLDAFQRIRTLLAEKHSPDVTLLLMLVHNCVFFIATSDDLSLRDSSSDCLKEVLTQLAADSSDSAAHQRALFQTVVLQNLLPEVKRNLKLRSEPHRRGRALRRLAKHLAVTRMKRDTLVSYLLPIVTAFLRDDSAAKHHNLVDAAVDAVGVICRCLPWPRYLLILQYYLNQLPRSLDNQKLMVNSYIGDSLYTDDTSANKKKLAEPGKEIATTAEEKGEKEDTKEQPLGNEGEEEMLKELGDEEEEDEKGKTKSDDEHKMAKTSKYAEDDEILRVPIALAMSRAQDIRETSRDTLIKIVQSLGPSYFSFVLKELRASLLRGYQRHILSYTVWSLLRNMSGQLKAGDLDPCIPSLTEGIVSKLMEARSSKSYESYRLVARLVSKTSLALLVTPLKQIGQGLVDNDSLAVDALLTFVYALTKEVLPGLQVALKVTDTKKTDSETLRPPNQLLLKPEPPRGGKKPKTHVKTNVSIIIEFGLQLLYLLLKKGLVGGVKVEHLKLLDPFIATLTACIESKHVRVATASMRCLGWLLKFSLPALKKHIKKITAHLFVLLSNYAAAGAAKGENFELVVMCFKTMTVLVRDIKYHSISTEQLQVLLGYVEQDIHDYTRQATAFSLLKAILSRKLVVAEIEEVLHKVEQLSIKAESPHVRLQCRQVEMQFLLDYPLGKKLQRHLEFYTLLAEYAGFFFIPLVSRLTSDESPKCRKLTALAVKCLLGKSQDTSVMEDRQLDLLLFNVITLLMKLSRECDIVRSPRWTGTLNNIWGHLETHLLHPHAWVRLASAQMFGILLGAWTVDEVIARSSEGSSTDRKERSYIETDLDSWVYTLCGSFCKQLTSPQLDTELAEQAADNMTFSTMIKYRRSLAAVVRALQQQRALVCTAGTNALHNQQQAALQRVQPECVSVVPYREGSTSKGAVTKRKPYSPFTGKSNALDFTLARADDLVNWARKSSLWPMTFGLACCAIEMMHFAAPRYDMDRFGVVFRASPRQSDCMIVAGTLTNKMSPALRKVYDQMPEPKWVLSMGSCANGGGYYHYTYTVVRGVNRIIPVDIYIPGCPPSAEALLYGILQLQKKIKRMNSIQMWYRK

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01058	Oxidored_q6	NADH ubiquinone oxidoreductase, 20 Kd subunit	Family	Interproscan
PF07539	UTP20_N	U3 small nucleolar RNA-associated protein 20, N-terminal	Domain	Interproscan
PF20416	UTP20_C	U3 small nucleolar RNA-associated protein 20, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006137	Domain	NADH:ubiquinone oxidoreductase-like, 20kDa subunit	Interproscan
IPR006138	Family	NADH-ubiquinone oxidoreductase, 20 Kd subunit	Interproscan
IPR011430	Domain	U3 small nucleolar RNA-associated protein 20, N-terminal	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR046523	Domain	U3 small nucleolar RNA-associated protein 20, C-terminal	Interproscan
IPR052575	Family	Small subunit processome component 20	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17695	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0008137	Molecular Function	NADH dehydrogenase (ubiquinone) activity	Interproscan
GO:0030686	Cellular Component	90S preribosome	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0048038	Molecular Function	quinone binding	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-