Gene detail

Detailed information of KAK2156511.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2156511.1	E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER	ctg211_pilon	108228	146305	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2156511.1

ATGAGTCCAAGATTTGACGGGCTATCGCAAGTGAAGCCATTTGTGCGTTTGTTCTTTTATATGTCACAAGTTAATAAACTGATTATAACACGTGTTGATGGAAACTGCATCATAGAAGCACATGGACAGAATGGAGTGTTTGTCAACAGCAAGAGAATAGAGTTCACCACTCTCAATGATGGTGACAAGATTACTTTTGGTGGTGGAACTAGAAATGCTCAAATCGGATCCATATTGTCATCACCCTCTGGGTCACACATGTGTTACGTTTATCACAAGTCAGCTAAGGATATAGACACCTCAGGTGGGAATTGGTATTGTGATCCATCTACTGCTGATGACATCATGCAGATCGAGGACGTTGTCAATGGACAGAATGTTACACAGTGTTATAACCTGGAAGATTTCAACTGCACCGATGAATTAACAGCAGATGACTGTGTTGTCAATCTGACTGAAGGTGATGGCCCATCATCAGCAACAACAGAAATTATAACTCAGGTTCCACAGACTGTGACTATCTTACCAGACAACACAACACCTGTTACCTTAATTGAAAACAGCAGTTATTGTCACATGGAATCATGTAGCAATCCTCCTGCTAAAATTAAGGAACCGAAGAAGGGGAAAGGGAACAGGAGAAAACAGACAAAGAATTTTGTGGACTTGGATAATAATGGCATGGGAATCAATAAGAAAAGACAGCTACGACAAAGAAAAAGTTTAGCTAACATAGATCATCTTCCTGATGGATCATGTATGGAAACCAAGACCCAAAATCATGAACAAACTCAGCAGGTTGAGATGAACAATAGCACTGTCCTGTGTGCTGATTCTGATCCAGATTGCTGCAAAGAGAAGACGTCGTTTATGAGAAGCCTGCGGAAGAGGAAGCACAAGTCTTACCCCCAGTATATTCTTAATGATGATGAAGGCTCGGAAAGTGATGAGTTTTGTCCGGATGGTGATATTCCTGAATCACCGAACAATAATAGCCAGCCAGTAAAAAAAAAACTGAAGTTGAGTTCATTTCAGTCGGTCACGAAGGGAAAGGGTAAGAAAATATCAGGAAGACAAAACAAAAAGAAAGGTAAACACGAAGAGATAGACGAAGATGAACTTCGCTCCCTAAACAGCTGGTACATTTTGTCAGAATATAATGTTAAATCGGATGATAAGGACATGACAAATCTCGTACCACAAATTCAGAACTTGTGGGGTTCTCACAAAGGTATTATAAAGCCAGCACCAAGAATGGTTGAGATACTGAATGGCCCTTATCAGAGGCACCTCTATGCCTTTAATGATAAGGAATTGTTTCAGGTGGTTTACAAAAACGGTGAAGATCTGCATAATCCAAATTTGTTGAACTCTGAAGACTATAATGTTATAGTATATTTGGATGCTGCACTGTTTGAATACAAGGTGAAGCTAGGACAACTGGAGATTGAAGATTTTACGAAGGTCTTAGAACTTGTGAATAGGAGTTCATCCATCTTAAATATCAACGATTATGATCAACCAACTCCTGCTGCCAAACTCAAAAGAATAACTCAGCCAGAAGCAATATCTTTACCACTAAAACAGTATCAGTTGGACACTCTTGGATGGATGTATCACCTAGAATTAGAAGTCGGCAATACCTGGAAGGTTTCTAAGCTGGTTGATTGGCCTGAGGCTGACGTTGATATTGCTTTTGATTTGATCAACAAACGGGCATTTTGCCCTCCTGTGCCAGAAGTACCTAGCACTGAGTACAGAATTAACATTAAAGGAGGGATCTTGGCAGATGAAATGGGTCTTGGAAAGACAGTTACAGTCCTATCACTGATTGTTGCCCACCAAGATACCGATTCACCAACGGTACCAACACCAACAGTTTTTCATAATGGTCAAGAAATGCATCTACCAACAAAGGCAACTTTAGTTGTTGCACCAAGTCACCTGACTGCCCAGTGGAAAGAAGAAGCCGAGAAACATGCACCAGGTCTTAACGTCCTGCTCATAACTACCAAACCACAGTTTGAAAAGTATCGCTACGTGGACATCCTTAGAGCAGATTTGGTTGTAGTATCAGTACAATTTCTGCTTACTAACAAAACTTACACCACATTGCCTGCCGGAGTTGATGCTGAAGCTAGCTTTATGCGTCTGCTGCATAAACCAGGTATTAATCCACTGCTTGAGAAATGTCCCAACCTAGGCCATTTTAACTGGTGGCGTTTAGTTTGTGATGAAGCCCATGAGCTTATAACATACAAGGAAAAGCACAAGAAATATCCAGAGGAGCTACCAAGCAATGGTTTGCAGAAGTTGGAGAAGCTGACAGCACGACATAAGTGGTACATGACAGGCACACCACTACCACATAAGGAGAAGAGTTTAAGAGGAGCCCTTAAGTTCTTGGAAATGAAGGTGGATGACCAGTCACTGATGTATCGAGATGGTTCATTAAAAATTGATGAGGAGCTTCTGTGTTTTGGTCCAATACACAGATTTATCCTTGATACAATTTATGTGAGGAATACCAAGCAGTCTATTGGCACACAATATAGTGTACCTGAGTATGTGGAAGAGTTGATGTTGTTGACCATGTCTGATGTTGAAAGGGGTATATATGACAGTGCCAGCAACAGTCAAGAAAAACGTCAACTGTGCTGCCATCTACAGATAGCTACCAGAGTTAAGCAGATTGCAGGAATACAACAGAAATCTCTTGATGAAGTGAAGGATGCGATGATAGCTCACACTAAATCTGAGATACACAGGATTGAAAACTGCATAATAGAATCAAGGAAAGACATTAGATTAGCTAGAGACTCTCTGATGGAGGAAAACAAGTCATATCTCAGGGAAATCCTGGAAAACCGAATCAAACGTTACCAAGAGAAGATTGTGTCAAATGAAGACACAGTCAAAAAGCTCTCCTCGTCTCTCTCCTATTTTGAAAACATTGCTCCACGTATAACACAGTCAGCTGATGAACCCTGTGTTATCTGTTTAGATAATATAGTGTCTCTGACTGTAACACCTTGTGGACATCTGTTCTGCAAGAAGTGCATCATTCCATGTGTACAACAACAAGAGATGTGCCCAACATGTCGAAAGCATATCACTGAATCGGAACTAGTGGAAGTGAAGGATCAGAGTCAGAGGGAGAATCTAAACCGTTCTGCTGAGTTACAGAAACTTACTGAACAGTTTGGGACAAAGATGGCTTACCTCATATTTTATCTCCGATACCTTTTTAAAGCTGATCCAAACAGTAGAGTTATTATCTTCTCCCAGTGGGATGAGCTGTTACACAAGATTGGTAGCACTTTAAATGAACATGGCATCAGGAATGTATTCGTGAAGGGTAATGTGCACGTCAGGAACAAGGCCATATTATCATTTAGGAAGCAGGAGAAGACCCGTGTTATCATGCTGTCGCTACAAAATGCTGCATCTGGTACTAATTTAGTGGAAGCAAGCCATGTGATCCTGATTGATCCGGTTGCAGGAAGCAAGGAGGAAGCAACATCGATAGAGGCACAAGCCATTGGAAGAGCCCACAGGATGGGACAGGACAAGGAGATCCTCAAAACCTTGGAGTACCAGAATGATAACATGATACTATTTAAGTGTACAGTAAAAATTAAAGTTATACGGATGATAGTCAAAGACACGCTGGAACATGAGCTCTACCTGCGTAACAACTCAGAAAATATCCAACAGATGGAGCTGGCATTTGATGAAGAAGATACAGAGACGATGGGTGTGCAGGTTATCCGGAAAGTGCGCAAGATTCCAAAACCCAAAGGAATATCAGCAAATACATCGTCAGTATTTGCAGGTGAGAGTCCTTCTACATCAGGCATTAGTAGGCCAAGAAGTGCAAGTTATGGTGCTAGGTCAAGAGGAGATTCTTCACGGCGTCGGTCCAGAGCCAATAACCAAAGGTTGAAAGTCTTGCTTGCCATGCAACAATTCTGGGGCTCAAACAGTGACAGCTTTTTCTAG

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF13920	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR052583	Family	ATP-dependent Helicase/E3 Ubiquitin Ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45865	E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-