Gene detail

Detailed information of KAK2154000.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2154000.1	UV-STIMULATED SCAFFOLD PROTEIN A	ctg279_pilon	97303	113445	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2154000.1

ATGGCTCAAAAACTGATGGACGTCGAACAGTGCCATGAGTTGGACAAACTAATAGAGGCACTAACGACATCAGGCCGACCTGAACTGGACCAAGTGGAACTGAAAAGGCTGAAGAATATCTGCAAACAGTCTGATGACTATGTGAAGAAGTGTTACCATGCTGCCATGATTCAGCTAACGAAGGAACATTCTGAGATACGTCTCTCTGCTGTTCAGCTGATGGATGTCCTCTTTAACAGATCTCACTGCTTCAGAGAGCTGTTACTGGCTGACTTCAAAGACTTTATGGAGTTAACAATAGAGATAAATGCTGATTATCCACTTCCACCTCCAAAACTTGTAGCAAAAACCCTGAAGAGCAACACCATTGAATTTGTTCACAAGTGGCATGAGAAATTTGGTGATGCATACAAGAAACTTGCCTTGGGTTATAACTTTCTCAAGAACTGCAAAAAGGTGAATTTTCAAGACATTCATGCAAGAAGCATTGCTGAACAGCAAAGGGAGGAGGAGCGAAGAACCAGATCTGAAGCTCAACAAAGGGAAAAACTTGAGAAAACACTGCAAGAAATAAAAGATATGACTCCAGAAATAGAGAATGCATTGATTCAGGCACAGAACTGCCTTGTCTTATTGTTGCCTGATCCTGATCACTTTGATATTGGCGGCAACACATCTCCAGATAGACAGCACGAAGACGAACATATTCCAAACGCTATCAACAGCACCACAGAGTGCACCACCACATTCGCCACAGAAGGTCAGACTAGTGGTGCGAATGTTAAATGCGTCGAAAACAATGGTATGAATCAGGAGGGGGAAAATGGCAGCCATCCCAGCATAGATAACAGTGCACATACTCCAGAAGAGTGTAATTCTAGTACACATGCAGTGAATAATGTTTTGTGTGCCAGTACAAAGATGGGAGTGAACCTTGTTGATTCTAACCAGACTCATCCAGTTTGTGAGGAGACTGATGAATTTATTGAACCGTCTAGTGGAGATTCGGAGGAAGAAGAAATGACAGCCAGTGAAGAGGATGATGAAGAGGATGATGGTCAGGAAGGTAAAAGTGACAACGGAGGAGAATGTGGTGAAGTTGACATGATGCGAGACCATGGCATATGCTCTCAGGAATTCAGTTTGACCATTGATGTGTACCCAGAACACGTGCAGGTTGAAGAAAACCCAGACAATGAAGATATTCTGCTGAATCTGAAGGACTGCCTGTGTCTAATTGATGTGAAGTATTTACCAGCTGTAAAAAACTGGTTAGAGATTTTTGCCAAGAAAGGTGGTGAACAGAAGCACATAAAAGGGGTTCTGGATTTAAAGGATTCACTTCAAAAAATGAAAGAAAAAATCTCAAGGCTAAGAATCATGAAATCATCAAAACCAATAGCTGAGAAAGATAAAGATAAGATTAAAGGTGACACTGACAGCGACAGTGGTGAAGATTTCGAGGAAGTGAAGGATTATAAGGAAGGATATGAACCACACATTCCTGATCATCTGCGAGAAGAGTATGGATTGACTGAGAAACCCATGAAACCTTCTACCAATCCCGACTGGGAGATGCCATGTCTATCTGATGCAGATGATCAGGATCCCACAACAGCCATGTCAACATTAAAAAAACTAAAACGCCAGATTGAGGCTAAAAACATGACTACATCTGATCCGATTCCAAGCACCAGTCGATTGTCTAACTTGAAAAAGCATAAATTAAAGGATGTACCTACTGTACCTTTTGGTATGGATTTGTTTCATTGGGGAGAGAAAATTGAAACACCATTATTAGTCAGATATGATTGTGAACATAGGTTCTGGATACCAAATACTGCTGAAGACAAAGTAGATGTGAATGCCTTGGAATCAATGAAGTCCCGGGTTATCAACTTTGCAGGAAGATTTCAGCCAGTCAGATGGTCTTGCAGAGCTCCACTCCCAAATGGAAAGGTGTGTCCTCGGATGGATCGACACAAGTGCCCATTTCATGGTGAGATAATACCCAGAGATAGCACCGGTCAGCCTACAAAGCTCAAACAGGAAGTCGCCGTACCAGAACAAGAACACACCGAAACAGAGACACCAGAGTGGGATGATCCGGAGTTACAGGCAGAGATCAAGGCAGCTACTGGAATTGACCTTTCTAGGAAGGGCAAAAGATCCAAGAGCAAGGGGAAGAAAAAATGCAAACAGAAAAAATATCCAGGGCTTACCGACATCAGAAATGAGCTGAATCCGGTTAGAAAGAGGCTGGAGAAGAAGGTTCTCAATCAAAATGCTATACGGAGGGTGGCTGATGCACTTTCTGCTATTGATGAGAAGAAACGAAAGGACAAATTCGGAAATACCTTCCATTATGTTCATGGACTAAGAAAAACTTGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09740	DUF2043	Uncharacterized conserved protein (DUF2043)	Family	Interproscan
PF20867	UVSSA_N	UVSSA N-terminal domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008942	Homologous_superfamily	ENTH/VHS	Interproscan
IPR018610	Family	UV-stimulated scaffold protein A	Interproscan
IPR049408	Repeat	UV-stimulated scaffold protein A, N-terminal alpha-solenoid repeats	Interproscan
IPR049431	Domain	UV-stimulated scaffold protein A, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28670	UV-STIMULATED SCAFFOLD PROTEIN A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000993	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0006283	Biological Process	transcription-coupled nucleotide-excision repair	Interproscan
GO:0009411	Biological Process	response to UV	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-