Gene detail

Detailed information of KAK2142730.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2142730.1	ATP-DEPENDENT RNA HELICASE DBP3	ctg920_pilon	122842	152512	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2142730.1

ATGTATAGTAATAGATCTAGAAATGGGCAACCGAGTCGAAGTCAGAATTACGCGGAGTCTCTTATTACGGAAGATTGGGACAGCGAGTTGAATACCGAGACTGAGGGCAGTTACCAAACAGAAATATCGGCTGCTGACTCTAAATATAATAACGACATTAATGCCGGTGTTTCTGAAGCTAGTTATGTTAACTCACCTGTTCAGACTGCTGTCTATACTAACACTTACTATAACAGTAACCAGAGTAGGTCAGGTCATGATTATAGGCACGAGGCACAGAATAATGACGACAGAACATACAGACGTGACAGAATAAGTCGCAATGACTATCAGCATGAATCAGGAAATATGATCATCGAAGTACCGAGTAGAGAAATCAGAAGAATTATAGGAAGAGGAGGAAGCAAGATTAAGGAACTTGAGAGGGATAGTGGTTGTCGGATAAAGATCAATAAAGAGCAAGATAACGGTACAATGGCTGGCATTGATCTTATTGGTAGCCAAGAAGCGCAGAATGCTGCTCAGCAAATGATAAACGATTTAGTATCGTCTAGTCATAATAGTGGATATGTTGATAGTCGAGGTCGTGGGAGAGCATTCCGAAACCAAGGAGGTGGTGGTACTTCTGGTGGTGATTTTCATTACGGGAATGATAACGGTGCTGAAAGAATGTTAGAAGTCGAAGTTGCCAGCCAGGATATTGCTAAGATAATTGGTAGAGGAGGTTGTAAAATCAGAGAATTACAGGAAGAGAGTGGTACTAGGATTAAGATAAACAGAGAGAGGGATGATGGTGTGATGGCAATAGTCGAAATACAAGGGAGTAAAGAAGGACAACAGAAAGCCAAACAAGCAATCGAAGACCTGACAGCGAGTAGAGGTCATCATAGTAGCTATGACCGTGGCCCAAGAGAAGACGGAAGTGAAGCTAATTCACATCACAGTGGAGGAGGTTTTGGTAACAGACGTACGTGGGGAGATGATGATCTGGAGATAGAAATTCCTACTAAAGATGTTGCACGAATCATAGGAAAAGGTGGCACGAAGATCCGAGAACTGCAAGAGAAAAGTGGTGCCAATATCAAGATTGGTGAAGATAGAAATTTTGGTCTTGTCACTGCTGTCCAGATTAGAGGCTCGAAGGAGGCTCAGATGTGTGCTAAACAGCTTATCGAGGAATACCTGGACCCGAACAACACACCTGACATGTATGAAAATCTCAAAGGTCTTGCAAGTAAACTACCAGAGCCTGAGGCTCGTCCAAAGATTAACTGGACTATGATCAATGAAAAATCTGCTGAATATGAAAGGGAACGTTGGAAAGATATACCACCTATTGAAAAGAACTTTTATATAGAACATCCAGATGTCACAAATATGGATCCAGATTTTGTTAAGAAAATCAGGAAAGAGAACAATAACATCATGGTGTTCGACTTACATGAAAACAATGAAGGAATAATACCCAATCCTGCCATTACCTTTGAACAAGCATTTGAACATTATCCTGATATCCTTGGAGAGATTAAGAAGGCAGGTTTCCAGGAACCGTCACCAATCCAGAAACAAGCGTGGCCTATTGCCTTACAGGGAATTGACTTGATAGGAATTGCTCAGGGGTGTGTGTGTACTGGTACAGGTAAAACCCTGGCCTTCCTTCTGCCTGCATTTATTCACATCGAAGGTCAACCGGTTCCAAGATCAGAAAGAGAGGGTCCGACAGTGTTGGTGCTATCACCAACGAGAGAATTGGCATTACAGATAGAATCTGAAGTGGCTAAATATAGCTACAGAGGCATTAAATGTTGCTGCGTGTATGGTGGTGGTAATCGTAGAGAGCAGATCCAGACTGTGTCTAAAGGCGTCGAGATTGTTGTGGCCACTCCAGGACGTCTTAATGATCTCATTAATAATGGCATACTCAGTTTAAAAAGTGTCACCTATCTAGTATTAGATGAAGCTGATCGTATGTTAGACATGGGCTTTGAGCCAGAGATTAAGAAGGTTTTGCTTGATATTCGTCCCGACAGACATACCATTATGACCAGTGCCACCTGGCCAGATGGTGTCCGGCGACTTGCCTCGTCTTACCTCAAAAATCCCATGCAGGTATTTGTAGGATCTCTGGATTTAGCAGCTGTACATAGCGTTCATCAGAAAGTGGAGATTATTGATGAAGATCTGAAGAAAGAAAGGTTGACAGAATTTTTAATTGAGGAACTTGGCCCCGAAGACAAAGTCATTGTTTTTGTTGGTCGCAAAGTGACTGCTGATGACATATCTTCTGACTTAGCACTTCAGGACATTCCTTGTCAGTGTATCCATGGTGATAGGGAGCAGTCCGATCGCGAGCAGGCCATCAAAGATCTGAAAGATGGATCGGTTAGGATCCTGGTTGCTACAGATGTGGCATCAAGAGGTCTGGATATAAAGGACATAACCCATGTATTTAACTATGACTTTCCACGTAACATAGAAGAGTACGTACACAGAGTAGGTAGGACTGGTAGAGCTGGACGTAGTGGTACTGCTATCACACTGATGACACGCAATGATTGGCGACAGGCCAAACCGCTAATTGAAATTATGGAGGAAGCTGGACAGAGAGTACCTGATGAGATATATAGCATGTCTCAGAGATATGATGACTTCCGCGAGAGACAGAGGGAGCGTCGTGAGGAGGAACGAAGCTCGGGTAGAAGCAGTGCGTTCAGTGGGTTTGCTGATGGTAGAGGAAATAGACCCGGTAGAGGTAGTAGAGGACGTAGGGGTAGATTTGACGGGGCCACGGTTGCCAGCTTTGATGACCCGTTTTCCTTCTGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013	KH_1	KH domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR004087	Domain	K Homology domain	Interproscan
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-