Gene detail

Detailed information of KAK2141491.1 in Paralvinella palmiformis Gene info

Gene ID	Annotation	Contig	Start	End	Strand
KAK2141491.1	OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD	ctg1091_pilon	39868	51787	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAK2141491.1

ATGCTCCCTCAGAAATCAAGAACTGCAGAGCAGATTGACTACTACAGGCATAAATACGGATTGGACCATCCGCTTATTATTCAGTATCTGGATATGGTAAAGCAGATGGTGACATTTGACTTTGGAAAAAGTGAAACAAGAAAACTTCCTGTCAGCCTTCTTATCAAACGGCATGTTCCTGTTTCCGCGGTTTTGACAGTACCAGCTTTTACCTTTGAAATAATTATTTCCCTGATCCTTGCATCGGTTGCCGCGTACTGGCGCGGAGGGTGGCTGGACAGAATACTTACAATTCTTTCTGTTATAGGTATGTCTATTTCCATGCTTGTGTTAATCATGCTTGGCCAGCAGTTTCTGGCGTACCGTTTCGGCTGGTTTCCTATTTCCGGCTGGACAAGAGGGATTGGGGCAGTTAAATATCTGGTTCTTCCCTGGATACTCTGGGTAATCGTAACAGTCGGTTATGATGTAAGATTTTTCAGAACTACACTGCTGGAAGAATCTCATAGAGATTATGTTCGGACTGCAAGAGCTAAAGGAGTCGGAGACAAGGACATAATGATCAAGCATATTCTGCGCAATGCAATGATTCCCGTATTAACATATGTGGTTATGCAGATACCTTTTCTGCTGACGGGCAGCCTTCTTCTTGAACGCTTTTTCAGGCTGCAGGATGCCGCAAATAAATTCGATCTTGACAACAGGTATGTTAAGCCGTTTAAAACCATACAGCATCCGCTCGGTACCGATAACTTCGGTAGGGATGTTCTTGCCCGTGTTGTTGTAGGAACCAAGGTTTCTTTATTCCTGGGAGCTGTTGCGGGTGACGGAGGGCCTTTGCTGGAGGTAAAAGGTCTTAAAACATATTTTCACACAGAGGAAGGGCTTGTTAGAGCCGTTGATGATGTATCTTTTTCCCTGGAAAGAGGAGAAGTTCTTGGACTGGTAGGAGAATCCGGCTGCGGTAAGTCTGTTACCAGTTATTCAATAATGCAGCTGGTTCCAATCCCGCCGGGAAGATTTGAAGGAGGACAGATTTTCTTTAAAGGAGAAAATCTTCTTGAATTAAAAGAACACAGCATGAGAAAAATCCGTGGGAATGAAATCGGAATGATCTTTCAGGAACCAATGACAGCTTTAAATCCTGTAGTAAGGATAGGAGCGCAGATAGAAGAAGCACTGGCTCTGCATACGTCACTGAAAAAAGAAGAACGGGCTGCCAAAGCAGTTGATCTGCTGGACAAGGTCGGCATTCCCGAACCAGCAAAAAGGGCAAAGGCTTATCCGCATGAACTTTCCGGTGGTATGAGGCAGAGAGTTATGATTGCCATGGTTTTATCCTGCGGTCCGGACCTGCTTATTGCAGATGAACCAACTACAGCCCTAGATGTAACAATACAGGCGCAGATACTTGATCTTATAAGAGAAATGCAGAACGAAACCGGTTCGGCAATGATTCTTATTACTCATGATCTTGCGGTTATCGCGGAAACTGTAGACAGAGTAATAGTGATGTATGCAGGGGAAATTGTGGAAAATGCCGATGTGGAGACTTTATTCAGAGAACCGGCGCATCCATACACAAAAGGACTGCTTGCTTCTATTCCCGTACTTGGCGAGCCAGGGAAAAAGCTTAAAGCAATTCCAGGCAGGGTGCCAAGTCTTATAGAACTTCCCGTTGGCTGTGCGTTTGCCAACAGGTGTTCTTTTGCCGGTCCCAGATGCACAAGCGAAGTTCCGGAAATAACTGTGGTTGATGATGGTCATGAAGTAAGAGTTGTAGGTCATGTAAAAGCAGTTGACGGTGTAAGTTTTGATATACCCAAAGGCAGAACCATTGGTCTTGTAGGAGAATCCGGTTGCGGTAAAACCACAACTGGCAGAACTATTGTAGGTCTTTATAAAGCTACAGAGGGAAAGGTGATTTTTGACGGAAAATCTATTTTTGAGTTCCCAAGGCAGGAACTGAATAAACTGCGTAGAAGGTTTCAGATGATTTTCCAGGACCCGTACGGTTCACTTAATCCCAGAATTCCTGTTGGAGATATTATTGCCGAAGGTCTGGATATTCATAAACTGTATTCAAATACGTCTGAGCGCAGGGAAATTGTGGAAGACCTTATGGATAAAACCGGTCTGGATCCTGCGTATATTAACCGTTATGCGCATGAATTTTCCGGAGGGCAGCGTCAGCGTATCGGAATTGCCCGTTCACTGGCCCTTAATCCGGAACTTCTTGTTCTGGATGAACCAGTAAGTGCGCTGGATGTATCAATTCAGGTTCAGATTCTGGAACTGCTGAACGATTTGAAAGAACAGATGGGGCTGACATACCTGTTTATTGCTCATGATCTTTCGGTAGTAGAATATTTTTCTGACTATGTAGTTGTAATGTACCTGGGCAAAATAGTTGAAATGGCAGACAGGGAAAGTCTATATAAGGAAAAACTTCACCCATATACACAGGCCTTGATATCTGCTGTTCCCTTGCCGGACCCAAAAGCAGCAAGTCACAGAATAATACTGAAAGGAGATGTCCCCTCTCCTGTTTCTCCGCCTTCCGGATGTCCTTTCCATCCGCGCTGTCCAAAACTTAAAGAAAAGATTTTTACACCGGAGCCGGTTCATATTCATCCGGTAATACGGATGGAAAATAAAGAAACCGGAGATCCCGTTGTAAATGCAATGAATAAAGCCGATTTATTCGGTCGTTTCCGTTTTACAAGAGCATTAGGATCAGAAGATACGGAAAAAGCTCTGCTGATTCTGCCTGATTCAGGATTAACTGAATACTGGCACATGGAAGAGCTTTTATACACTGCGTATCTTAATAATTCTGGAGCACTTATACTGGATAAGAAGGATACAGGTTTTTTTGTTCCCATAAAGAACGGATCAGGTATGGGAAACGGCGGAGCAATGTCCTTAGATCTGCTTGAGAAATCAGCGATGGAAATATTTCCCGGATGGATTGATATCTCAGGAAGATTCACCCGTATACAGGCAGATGAAAAACAAAATAGTTCTGATGTATACAGTGAGAAGTTTCTTGAAGGAATAAAGATAGAATTTACCCGGTTCGAAATAGAAAACGGAAGAAGATCTACAGTTTCAGTTGAACCGTTCGGTATTTTGCGGTTAGATGGCTTTGAAGTAACAGGACATTTAAATTACGGCGAATCAGAATCAGGTCCAATTATGGTAGGGGTGGCAGGACCTTATACTGGTGATCTTACTGCACTTGGTGTTTCTGCGGCACGTGGAGTGCAAATAGTTGTAGATGATCTGAATTCGAAAGGGGGCGTTCTGGGTAGAAAGATTAAGCTTGTTATTGAAGATGAGCAGTGTGAACCAGCGCAAGCTGCAAATGTGGCGGCAAAGTTTGTGGGTGACAAAGTAGTAGCAGTTATTGGCCACTCATGTTCAGGGGCTACTCGTGCTGGGATGGATTTGTACAAGAATGAGAATCTTGTAGTTATCTCCCCATCAGCGACAAATCCTGAACTTACTTCGGGGATATATTCCACATTTTTTCGTACGGTAGCACCAGATACTTCTCAAGCAAAAACATGGGTTGATTTTTTACAATCAAAAGGTGTGCGCAATGTAGCATTTTTGCATGATAAAGGCGACTACGGTAAGGGCCTTGCCGAATACGCAAAGGAATTTGCACAGGAAGCAGGTATAAACTCGGTACTCTTTGAAGGTATTACACCAGGTGGTTTGGATTATTCGGCAATTGTGTTGAAGATTTCTAATACAAAGGCACAGGCCGTAGTCTTCGGAGGATATTACCCAGAAGCATCCAAGCTTATTTCGCAGATTAGAACTCAAAAGCTTGATGTGATTTTTGTTTCTGGTGATGGAGTTAAAAACCCAGGCTATCTTGGTATAGCAAAGCAAGATGCTGAGGGAACATACGTTACTGGACCAAAAGATGTGTCTGGTCTAGATTTGGCGAAAAAAGCACGTACTCAGTACGTTGACAAGTATGGCGAAGAACCTGGATCTTTTTTTAATGAAGGGTATTCAGCTGCATTGGTTCTTTTTGGAGCGATGGAAAAGGCAAAATCGACTTCATCAAAAGCAGTTATGGCTGCGCTTCGACAGAACTCCTTTGATACGCCAATAGGCTACACCATGGTATATGGTATTGTCAAGCTCATCAACTTCGCACATGGTGAGATTTATATGATAGGGGCATTTACTGCACTAATTCTTATCGAAGCACTTACAGTACTGAACATGCCTTTTGTTGCAATCATTGTATGTGCGGTGCTTGTTGCTATGGTGAGTGCAGCAGCGTATGGGTATAGTATGGAAAAGATTGCCTATAAGCCGGTACGATCAGCGCCTCGCTTATCGGCTTTGATAAGTGCGATAGGATCTGCCATAGCAGCACTTGGGGGCATATTAGTCAGTGCCTATATCGGACAGATAAACTTTTATATGGGATTTCTTGCGGGTATCAAAGCTTTCGTGGCAGCAGTTTTAGGTGGCATTGGAATATTGGGGGCTTCAGAAAAGGAAAAAGAACTGAGTATGTATTTTGGAGGAATTCATGCGGTAGACTCGGTAAATCTACACATTGAAGAAAACGAGGTGATTGCTCTTATTGGTCCCAACGGAGCTGGAAAAACAACTGTGTTTAATTGTACGACGGGTATGTATACCCCTACAACGGGAAAGGTAATGATTAGTTCGCCGAATGTTCGGAAACAGGAAGACATAGCAGATTGCCGTCCAGATGTCATTGCAAAGAAGGGACTTGCGCGAACATTCCAAAATATTCGTTTATTTCTTGAGATGACTACCTTAGAGAATGTCATGGTTGCCTATCATATTCACTTAAAAAGCACTATATGGGATGTCTTGTTTGGTGGAAGCAAGGTGAGAAAAGAAGAATCACATATGGTAAAAAAGGCGTATGAGTATATGGGGATGGTGGGTATTGCCAAGTATGCCCATGAACTCTCGAAAAATTTGCCATACGGAGTGCAACGCAAGTTAGAAATTGCCCGGGCATTAGCAACTAAACCGTTCCTGCTTTTATTAGATGAGCCGGCTGCAGGAATGAATCCCAAGGAAACAGAAGAGCTTCGCAATATTATTATAAGTTTGAGAAAACAAGTATCTATTTTTCTTATCGAACATGATATGAGTCTTGTTATGACCCTTGCCGATCGTGTCTATGTTATGGACCATGGAAAAATGATTGCACATGGGCGGCCAGAGGAAATAAAGCAGAATCCTGAGGTTATTCGAGCTTATTTAGGTGGAGACTATGCTTGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00528	BPD_transp_1	Binding-protein-dependent transport system inner membrane component	Family	Interproscan
PF02653	BPD_transp_2	Branched-chain amino acid transport system / permease component	Family	Interproscan
PF08352	oligo_HPY	Oligopeptide/dipeptide transporter, C-terminal region	Family	Interproscan
PF12399	BCA_ABC_TP_C	Branched-chain amino acid ATP-binding cassette transporter	Domain	Interproscan
PF13458	Peripla_BP_6	Periplasmic binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000515	Domain	ABC transporter type 1, transmembrane domain MetI-like	Interproscan
IPR000709	Family	Leu/Ile/Val-binding protein	Interproscan
IPR001851	Family	ABC transporter, permease	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR013563	Domain	Oligopeptide/dipeptide ABC transporter, C-terminal	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR028081	Domain	Leucine-binding protein domain	Interproscan
IPR028082	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR032823	Domain	Branched-chain amino acid ATP-binding cassette transporter, C-terminal	Interproscan
IPR035906	Homologous_superfamily	MetI-like superfamily	Interproscan
IPR050388	Family	ABC Transporter, Nickel and Peptide Import	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43297	OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006865	Biological Process	amino acid transport	Interproscan
GO:0015833	Biological Process	peptide transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-