Gene detail

Detailed information of KAJ8418786.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8418786.1	MYD88	AAFF_1.1_unplaced_1	10828212	10837211	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00002850

AGATAAACTCGTGTAACGAACACTCCCCCTGTGACGTAGTTTGTATGCATTTCCTCATTCTTTGGACTAAGGAAATCACTTCAACCAGTTCAGTCGTCTGTTTCCAGAAAACATTCGAACAGCAAATGTAAGATCATTATTGTCAGGCTCTAGTGGAAACTTTTCGCTGCAGGTTTTGTCAGTTCATTTGGGGCAGGATTTACACAAAGAAAACACTCGTTTAAACTATTCTATTGCCCTGAAGTCTCGGcggatttatttttctcctgaGTTATCAACAGCTGTAGAAATATTGCCAGTTAGTTAGTAGTCTCCTACGCATGTGAATATGGCAGGCAATTCAGAAATAGATTACTGGAGTATTCCGTTGATAGCTTTAAATGTCAAGGTTCGAAAAAGTCTTGGACTTTACTTAAACCCGAGTAATACTGTGGCCGCCGACTGGGCTAATGTAGCTGAAATTATGGGGTTCAGTTATCTAGAAATAAAAAACTACGAAAAACACGATAACCCAACTAAAAAGATTTTAGAAGACTGGCAGGCAGGATGTAAGCAGGCCAATGTGGGGAAGTTATTGTCCATACTTGAAGAAGCTGAGAGAACGGATGTGGTGACGGACCTGATCAAATTTATCGACCAGGACTGCATGAATTACCTGAAGAGTCTGGAGAGGGAGCCGCCAGTTCAGGTAGATGAGGTGGACAGCTGGACGTCTGGAAAGAATGGCATAACTACAAATGATGATCCGATGGGCCACACTCCGGAAATGTTTGATGCCTTCATTTGCTACTGCCAGAGTGATATCACATTTGTCCATGAGATGATCCGGCAGCTGGAGCAGACGGACTACAAGCTGAAACTGTGCGTGTTTGACAGGGACGTCCTCCCAGGCACCTGTGTTTGGACCATCACCAGCGAACTCATCGAGAAGAGGTGTAAGAGAATGGTGGCAGTGATTTCAGATGACTACATTGAGAGTGATGCATGTGACTTCCAAACCAAGTTTGCTCTCAGCCTCTGTCCAGGTGCTCAGAGAAAGCGTCTAATCCCAGTGATGTACAAGCCGATGAAGAAACCTTTCCCAAGCATCCTGCGCTTCCTGACCGTGTGCGACTACACCCGGCCCTGCACCCAGTCCTGGTTCTGGGGCCGACTCGCCAAAGCACTGTCCCTCCCGTAACGGATGGGCCTTAAACCACCACATTACACGGGCTGTAAGTAAGTGGGGTAGCTTGTATTTGTGGTTAGGAGGGGAACGTGGGACCCAACAGCCAGTGCGCTTGGTTCCTTTTCCAGCTCGCCCTCTGCAGATAGACTAATTCTGAACAATTCACACACATTTCCCTGTTGACGTGCTGCCCCATTTCCCatcatgcagactgtgggggaTGATGGGCAGTAATCGTTTTTGTGAACATGGGTCCCATGCTCTTTGAAAGTTTTCaaatttagaaaataaaatcaagGAATTTAAACTACTTCTGGGGTTAATCATCTGGAAAATGTCCAGGTCATGTTTTATATCAGTTATGCCCTCAGAAACTGATCCTTGATCAGAATCCACATTCCACTCAGaatggttgtggttgtggtttggATTGGCTTGCTGGGATGGCATTCACTTTCAGTGCTATTGAGGCCAATTTTATATTGCTATATTGGACTGCAATACCAGACATGCCAACCCTCCCGATTTCGCCAGGAGCCTCCCGGGAAATCAGCCCAAATGCCGACCTTACGGCCATGTGCCGTATCCTCCCggatttggaaataaaaagtgtgttttattttgtgttgttattgTGTAGCTGGTAGCGCTGGCGAATGAGTGTAGTCTACTGCAtgcagcacatgcacacatgtacccGCTAGCGATGCAGCTGACGAACGAGTGTAGTTCACCGCATGCAgtacatatatgtacatgtcaggggcccagattagcagtcatcCTATAGTCTCGGATGACTACAAATTAAGAAGGacaaccttcgatttccaagtgatcgtcctgctgacgactgaatttagatttttattattttttaaattgagctaactggaactaattctgttttacactcataTCGTAACAAGCATGTCATGcacggcacattgtcactcgcatgcagtctgtgctcaccgtgtttgttgttgttgctatgccagactgcagcagtcaagcaagttcgtgGATCGCGGCACATaaacacaacagcgagaaccagctaattagttagcgttcacggacattgggtatcgatatctgttattgctagttgcttgctaacacaaggcttagtaagtgatcatgcatttatcacttaccaagccttgaattagcaagcaatatccatgaacactagctagctagttactgtctatattcagttcagtgagccctcccaccaggctgaagaatcgctgtgattttcctgcagtgatttctcatccctgctcggttaaatctaggaattattagctagctattacgttagctgccataccacactctagttgggaatggaaaaatctattttgagtCCCGACTAGACTGTACGTTATGatacactagtcgctaacgccacctgcgggcacccatCAGAGCACTACTAcccagtcccatgagcacacgctgcacaagtcaaacataaatatccgggtagaaaagaaataacgttaactgTCGTGTCCATCTTTGtactacatacgacgtagtgatcacattttcaaagatgtccagatttattgagggtgcaagtccacccctcactaaaaaggctaaaaccaaagaagatcagctaaaaactcagcgaaaatatgattcagagagcagagaccgCACTTTCCAGGacaattggaaggtgaatagaccaaggacaagtaacttttaggaaggacaagtatcttttctaagatacttgcgctttgacaagtatgacttttaccatAATCTGGACCCCTGCATGTACAAGCTATTGCTAGCGCTGCAGCCGAACAAGTGCTTTTCACCGACTTCACCCCAACATGCGCGTATACGCACATTTTCCCTATTTGTTAGTCTAGCCGCAAAAACAGTCAATATGTGTGCCGCTCGCTTCATGCGCTTGCGCTTGACAGATCCTCCCTGATTACAGGATAATGTTGGCATCACTGCAATACTCATGATATGATATGGAATTATTTCAAAATGCATACCAGtcggtaaaatgtaaaacacatttCCGACGCGAACATCAAAGTGAACacttcattatttatatatttataaatataatataattataaaaaatataatataattataaaactatccagatatgtaaaaatatacataaaagaGACAAGTAATTAAAGGTGAAATATTTGCCATCCCCACTCATTGATTGTGCAAAATAGCATTTTGGGTGTTGAATGTCTTCTCAAATGACTTTACCCAAGAGGGCAAATCTGCTTTTACCTTTTGTTTACTTAAGACCATACGTGCCCGATTAGACCAATCATTGTCATTACTTGGCCAAATGACCCTTGCAGCTTTGCATGCAGCTGTTCTGGAGTTTAACTAACTATTGATTAGTGTTCACTTCTTTCATGAAGctgtagtagtagtcataactAGAATGAAGGAACTACCATAGATTTCAGGTTTCCTTATGGTTTGTCACGGTTCCATAAAAAGGGAAAAGCACATTACATTTCCTGTCTTTACATATGACTGTTCTGTCCTGTTGAAATGATAAACTAGCACTGCATTCCAGACCAGACCATTGTTTGTAATGAAAGTGACATTTATTCTGAGAGTGCAACAGAGATTAGACACTCAGAAATGTAATATTCCCATGCATTAAAGCAAtgccatatacagtattattttagcatttagcgTTGTCTCGTGATCGGCATTAGCCTCTAAAAGTTTGTTGGTTTCTTAGTCAAACAGAATCTGTATCTGTGTTAACCATCACACCGGCAGTGGCTAGAAAAAGGGAAGGAAATGGAAATTCAATTCAGCTGTAAACATACAAACCACTGTAAAATGGCAAACACATCCATTTAGAATGTgctaaaatgtgatttatttcccATTTAATATGTTGATGCTTTGCAACTCGGATGCTTTTGAAAgtgaaatttgtttttttttttctggggggtttttctgtaaatgtatacacctgtgtattttttaattgtggTTATAGATTGTAATTAAGTGAATGTACAGTGGGAAATGCAAACAGACAATATCTGAAAGAATATTGTACTGTACATCGCTCAGTCCACATCTAGGGAAAAATCAATAGGAACCCATTTGTGTAAATAACACTCATCTATTTGTACTctgtttaaatagtttttttgtttggtcaaAAATGTTTGGTTCTGAAATGGATTAAGATGTATTTGGCCTTTATACATTTGTGTACACCAGCCTACGATCTTACTACCACACCAAGTAAGATGTTAAATCATTTCCTCACCAAGGCCATAAAATAAATAGTGGAACACCATGTACACAAATTCTGGAATAAAGTTATTTACTTTCGGAATATAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF13676	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR017281	Family	Myeloid differentiation primary response protein MyD88	Interproscan
IPR034249	Domain	MyD88, death domain	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15079	MYD88	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002755	Biological Process	MyD88-dependent toll-like receptor signaling pathway	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0008063	Biological Process	Toll signaling pathway	Interproscan
GO:0034142	Biological Process	toll-like receptor 4 signaling pathway	Interproscan
GO:0035325	Molecular Function	Toll-like receptor binding	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0045087	Biological Process	innate immune response	Interproscan
GO:0050830	Biological Process	defense response to Gram-positive bacterium	Interproscan
GO:0070976	Molecular Function	TIR domain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-