Gene detail

Detailed information of KAJ8418780.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8418780.1	VILLIN	AAFF_1.1_unplaced_1	10599878	10681600	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00002790

ATGGACAACACGTCCATAATTACCCAGGTTGCTAAcccaaaggaggaggagagcctTTCTTCGAGTCAAGAAAAAGTTTCCCAATCGAACAGCAGCTTAAAGAAACAGAGGAGTCGAGGCATCTTCAGCACTTTTTTCTGTTGCTTCCAGAATTACAATGTGGAACCACCTTcaaccaacaacaacaccaccagCTCCCTACCACCACCTGTGGAGGAAAATGGGACGCTTCCGAAGTGTGACCAGGTTGAGGTCATCCCCATCCCCAGTCCCCCAGCCAAAAGCCTCCTACCTGAGATGAGCATATCCGACTACGGCAAGAACTGCGTGGTGATCGACTTGGACGAAACCCTGGTGCACAGCTCCTTCAAGCCCATTAGCAATGCCGATTTCATCGTCCCCGTGGAGATCGATGGCACAGTTCATCAGGTGTACGTGCTGAAAAGGCCCCATGTGGATGAGTTTCTACAGAAGATGGGGGAACTGTTTGAATGCGTGCTCTTCACCGCTAGTCTAGCCAAGTATGCAGACCCCGTGGCAGACTTGTTGGATCAGTGGGGGGTGTTTCGCGCCCGACTCTTCCGAGAATCTTGCGTGTTCCACCGGGGGAACTATGTCAAAGACCTCAGCCGATTGGGGAGAGAGCTGGGCAAGGTCATCATCGTGGACAACTCGCCTGCGTCGTACATCTTCCATCCCGAAAATGCGGTCCCTGTGCAGTCTTGGTTTGACGACATGACAGACACCGAGCTCCTAGATTTAATCCCTTTCTTTGAAGGACTGAGCAAAGAGGAGGATGTTTACGGCGTGTTACAGTCCCTGAGGGCCAGCGGCCTGAAGGGGGCGGCACAGAGCACGGCAGAGAGCAGCCCCACCCACCTGGTATCTGACCGCACCCTGGACGGACTGAACGTTTGCGGCGCAGCCAGATTGTCCAGCTCCCCGCTGCATGTTCTCATTACCGTCCCGGAGTACAAATTGCCCTGGCAGCCCCTGCCATCGAAGCTCAGTCAGGACACTCTGGTCTGGCACGCACATTCAGCCCAAAATCCCCGAACGATGTCTGAAGAAACCCCAGAGGCCTTTAAAAACATCCATCGAAAGCCTGGGCTGCAGATATGGACCATaaacaaaATGGAGATGGTCCCTGTCCCCCAGCAAGGCTTTGGGAATTTCTTTGAGGGTGATTGTTATATCGTGCTGCATgaaaGCCATGACACTGCCCACACCAAGAATGTCCATTACTGGATCGGGAACACCTCCTCGCAAGATGAGCAGGGGGCAGCGGCCATCTACGTCACCCAGCTGGATGAGTTTCTGGGGGGCAGCCCCATCCAGCACAGAGAGGTGCAGGGTTGTGAGTCATCCAAATTCCAGAGCTACTTCAAAAATGGCATCATCTACAAGAAAGGGGGGGTTGCGTCAGGGTTTCAACACGTGGAGACCAACGTGTACAACATCCTGCGTCTGCTGCAGATTAAAGGCCGCAAGCACGTCAGAGCCACTGAGGTGCCCGTCTCCTGGGACAGTTTCAACACCGGAGACATATTCCTACTGGACATGGGGAAGGTGATTGTGCAATGGAACGGCCCGCAAAGCAACAGAAGGGAGAAGCTGAAGGCAGTGCTTCTGGCTCAGGACATCCGGGACAGAGAGCGGGGAGGACGGGCCCAGATTGGTGTGGTGGAGGGCAGAGATGAGGCAGACTCCCCGGAGCTGATGAAGACCATGAGGGCCGTGCTTGGTCAGAGGGAAGGGCAGCTGAAAGAGGCCATCCCGGACGACAAGCCAAACATCTACCAGACTGGCAGTGTCAGGCTGTACCATGTCTCCGATGCCAGCGGTAACCTGGTCGTCCAAGAGGTCGCCACACAACCACTGACCCAGGATCTGCTCCGCTCCTCGGACTGCTACATTGTGGACCAGGGCGGGACCAGTATCCTGTTGTGGAAGGGTAAGGATGCCTCCAGGGAGGAGCGGCGCGCGGCTCTGGGTAGGGCAGTGGGCTTCATCAAGGCAAAGAACTACCCCTCCACCACCAATGTAAAGGTGATGGCTGAAGGTGGGGAGTCAGCCATGTTTAAACACCTATTCGTGTCCTGGAGAGACCAGGGCCAAACTCAAGGCCTGGGCAGGACCTACTCCATCGGCAAGATTGCTAAAGTGAGCCAGGAGAAGTTTGATGTGATGGAGCTCCACGCCCACCCTGAACTGGCCGCCCAGCAGCGCATGGTGGATGACGCCTCTGGAGAAGTACAGGTGTGGCGCATCGAGAACCTTGAGCTGCAGGAGCTTCCCTCCAGCTCGTATGGCCAGTTCTATGGAGGAGACTGTTACCTGACACTCTACACCTACAAGAGGGCCAACAAGCTACAGTATATTCTCTACATGTGGctgGGGAGCCATGCCACCCAAGACGAGATCACTGCATGCGCGTACCAGGCTGTCAACGTGGATAACAAGTACAATGGGGCGCCTGTCCAGGTTAGAGTGACCATGGGCAAGGAGCCGCGTCACTTCTTGGCAATTTTCAAGGGAAAGTTTATCATCTTCGAGGGCGGGACAGGCCGAGCTGGGCAGGTGAACCCTAATCCCAGTGACGTCAGGCTGTTCCAGGTGCGAGGGGCGCATGAGTTTAACACCAAGGCAACCGAGGTCCCGGCCCGCTCCTCCTCCCTGAACACCAACGATGTCTTTCTGCTGAAGACCGACCGACTCTGCTACCTGTGGTATGGGAAGGGCTGCAGTGGGGATGAGAGGGAGATGGCCAAGTACGTGGCTGACATCCTCTCCAAGCAGGACAAGCAGGTTGTGATGGAGGGACAGGAATCGGCAGAGTTTTGGGTGGCACTGGGGGGGAAGGCTCCTTACGCCAGTGATAAGAGGTTCCAAGCGGAGGAGCCAGCCCACAGTCCCCGGCTGTTTGAGTGCTCAAATCAGACGGGCCGTTTCCTGATGACGGAGGTGGAGGACTTTGCCCAGGAGGACCTGGACGACGAGGATGTCATGCTGCTGGACACTTGGGAGGAGaTCTTCCTGTGGATTGGCAAGTCGGCCAACGAATACGAAACCAAGGAGGCGTGCACCAGCGCAGTGGAGTACCTGAAGACCCACCCGGCGAACAGGGACTCAGGCACGCCCATAATCACAGTCAAGCAGGGCTATGAGCCCCCTACCTTCACCGGTTGGTTCAATGCCTGGGACTCGCACAAATGGAGCGGTGGCAGTTCATACgaggaaatgaaaaataaactggGGGATGTTGCATCTATTTCACAGATTACTGTTGATCCGAACAAAACAGATATGAACCTGCAGGACGGGGGTGGCAGGGGATACAGTGCCCCGGGAGGTCCGGTCAGTTCCACACTGCGCGTAGCGGCGCCGGCCTTCAAGACCCAGGCGGAGGTACCTAGTGCCACCTCTCCTGTCAGAGTTACCTCTACTGCCAGAGTCACAATCTCCTCTGGGGGCAGCACGCCTGGCATGGCCCCTGAAATGCTGCTCAACAAAACCCCAGACGAGCTGCCCACAGGAGTGGATCCAGGCAAGAAGGAGGAGTACCTGTCAGATGCAGATTTTGAGACCCTGCTTGGTTCTTCACGGCCAGATTTCTATCGCTTGCCCAAGTGGCGGCAGAATCATCTAAAGAAGGAGGCGGGGGTTTTCTGA

Transcript

AAFF_T00002790

GTTGATATTGTGTTCCAGCACAATTTTTTCGgggtattttgtttttctttttttcattttgggaaGGGAGGGGGTTCCTGGAAACCGCCTCCTTCATCCAGTTCGCGGTGCTACAGTATTGCTGGGCTGTTTGTGGAGTGAAAACGGTGATCGCCTCCATGTTGGAAAGAACACAGAAACAATTCATCATTTGCTCAAATatataaaaccccaaaacaggATTACGTTGTTGCATGCCTTGACTAAATCGGTGGTACAAAGACCGGAGAGGCGGAGGCAGCTTTCCCCCACGAGAGTAAAACCTATGCGGGATACAGTGTGTTTCAATTACCTTGGCTAGGAAGCTAGCAAAGTCAGCTAGGTTTCGTTTCtgtgtttcatttcttttaaTGTTATTGTACGTGCTCATACGTAAAGAAATGGTATTAGCTGAATGGTGAACAAAGGGGGGCCTGCGCTCTGTTCGGACTACGTTGTTTTTTCGTGTAACGTTACAGCTAGCAGTAGCGTTACTGTTTTGATACGAAGTAGACTTGTTAAAAAGCTACCTAGTTACATATTCtgaaataaagtgaataaaaagGAATAGCATTCCGTTTCCATGGACAACACGTCCATAATTACCCAGGTTGCTAAcccaaaggaggaggagagcctTTCTTCGAGTCAAGAAAAAGTTTCCCAATCGAACAGCAGCTTAAAGAAACAGAGGAGTCGAGGCATCTTCAGCACTTTTTTCTGTTGCTTCCAGAATTACAATGTGGAACCACCTTcaaccaacaacaacaccaccagCTCCCTACCACCACCTGTGGAGGAAAATGGGACGCTTCCGAAGTGTGACCAGGTTGAGGTCATCCCCATCCCCAGTCCCCCAGCCAAAAGCCTCCTACCTGAGATGAGCATATCCGACTACGGCAAGAACTGCGTGGTGATCGACTTGGACGAAACCCTGGTGCACAGCTCCTTCAAGCCCATTAGCAATGCCGATTTCATCGTCCCCGTGGAGATCGATGGCACAGTTCATCAGGTGTACGTGCTGAAAAGGCCCCATGTGGATGAGTTTCTACAGAAGATGGGGGAACTGTTTGAATGCGTGCTCTTCACCGCTAGTCTAGCCAAGTATGCAGACCCCGTGGCAGACTTGTTGGATCAGTGGGGGGTGTTTCGCGCCCGACTCTTCCGAGAATCTTGCGTGTTCCACCGGGGGAACTATGTCAAAGACCTCAGCCGATTGGGGAGAGAGCTGGGCAAGGTCATCATCGTGGACAACTCGCCTGCGTCGTACATCTTCCATCCCGAAAATGCGGTCCCTGTGCAGTCTTGGTTTGACGACATGACAGACACCGAGCTCCTAGATTTAATCCCTTTCTTTGAAGGACTGAGCAAAGAGGAGGATGTTTACGGCGTGTTACAGTCCCTGAGGGCCAGCGGCCTGAAGGGGGCGGCACAGAGCACGGCAGAGAGCAGCCCCACCCACCTGGTATCTGACCGCACCCTGGACGGACTGAACGTTTGCGGCGCAGCCAGATTGTCCAGCTCCCCGCTGCATGTTCTCATTACCGTCCCGGAGTACAAATTGCCCTGGCAGCCCCTGCCATCGAAGCTCAGTCAGGACACTCTGGTCTGGCACGCACATTCAGCCCAAAATCCCCGAACGATGTCTGAAGAAACCCCAGAGGCCTTTAAAAACATCCATCGAAAGCCTGGGCTGCAGATATGGACCATaaacaaaATGGAGATGGTCCCTGTCCCCCAGCAAGGCTTTGGGAATTTCTTTGAGGGTGATTGTTATATCGTGCTGCATgaaaGCCATGACACTGCCCACACCAAGAATGTCCATTACTGGATCGGGAACACCTCCTCGCAAGATGAGCAGGGGGCAGCGGCCATCTACGTCACCCAGCTGGATGAGTTTCTGGGGGGCAGCCCCATCCAGCACAGAGAGGTGCAGGGTTGTGAGTCATCCAAATTCCAGAGCTACTTCAAAAATGGCATCATCTACAAGAAAGGGGGGGTTGCGTCAGGGTTTCAACACGTGGAGACCAACGTGTACAACATCCTGCGTCTGCTGCAGATTAAAGGCCGCAAGCACGTCAGAGCCACTGAGGTGCCCGTCTCCTGGGACAGTTTCAACACCGGAGACATATTCCTACTGGACATGGGGAAGGTGATTGTGCAATGGAACGGCCCGCAAAGCAACAGAAGGGAGAAGCTGAAGGCAGTGCTTCTGGCTCAGGACATCCGGGACAGAGAGCGGGGAGGACGGGCCCAGATTGGTGTGGTGGAGGGCAGAGATGAGGCAGACTCCCCGGAGCTGATGAAGACCATGAGGGCCGTGCTTGGTCAGAGGGAAGGGCAGCTGAAAGAGGCCATCCCGGACGACAAGCCAAACATCTACCAGACTGGCAGTGTCAGGCTGTACCATGTCTCCGATGCCAGCGGTAACCTGGTCGTCCAAGAGGTCGCCACACAACCACTGACCCAGGATCTGCTCCGCTCCTCGGACTGCTACATTGTGGACCAGGGCGGGACCAGTATCCTGTTGTGGAAGGGTAAGGATGCCTCCAGGGAGGAGCGGCGCGCGGCTCTGGGTAGGGCAGTGGGCTTCATCAAGGCAAAGAACTACCCCTCCACCACCAATGTAAAGGTGATGGCTGAAGGTGGGGAGTCAGCCATGTTTAAACACCTATTCGTGTCCTGGAGAGACCAGGGCCAAACTCAAGGCCTGGGCAGGACCTACTCCATCGGCAAGATTGCTAAAGTGAGCCAGGAGAAGTTTGATGTGATGGAGCTCCACGCCCACCCTGAACTGGCCGCCCAGCAGCGCATGGTGGATGACGCCTCTGGAGAAGTACAGGTGTGGCGCATCGAGAACCTTGAGCTGCAGGAGCTTCCCTCCAGCTCGTATGGCCAGTTCTATGGAGGAGACTGTTACCTGACACTCTACACCTACAAGAGGGCCAACAAGCTACAGTATATTCTCTACATGTGGctgGGGAGCCATGCCACCCAAGACGAGATCACTGCATGCGCGTACCAGGCTGTCAACGTGGATAACAAGTACAATGGGGCGCCTGTCCAGGTTAGAGTGACCATGGGCAAGGAGCCGCGTCACTTCTTGGCAATTTTCAAGGGAAAGTTTATCATCTTCGAGGGCGGGACAGGCCGAGCTGGGCAGGTGAACCCTAATCCCAGTGACGTCAGGCTGTTCCAGGTGCGAGGGGCGCATGAGTTTAACACCAAGGCAACCGAGGTCCCGGCCCGCTCCTCCTCCCTGAACACCAACGATGTCTTTCTGCTGAAGACCGACCGACTCTGCTACCTGTGGTATGGGAAGGGCTGCAGTGGGGATGAGAGGGAGATGGCCAAGTACGTGGCTGACATCCTCTCCAAGCAGGACAAGCAGGTTGTGATGGAGGGACAGGAATCGGCAGAGTTTTGGGTGGCACTGGGGGGGAAGGCTCCTTACGCCAGTGATAAGAGGTTCCAAGCGGAGGAGCCAGCCCACAGTCCCCGGCTGTTTGAGTGCTCAAATCAGACGGGCCGTTTCCTGATGACGGAGGTGGAGGACTTTGCCCAGGAGGACCTGGACGACGAGGATGTCATGCTGCTGGACACTTGGGAGGAGaTCTTCCTGTGGATTGGCAAGTCGGCCAACGAATACGAAACCAAGGAGGCGTGCACCAGCGCAGTGGAGTACCTGAAGACCCACCCGGCGAACAGGGACTCAGGCACGCCCATAATCACAGTCAAGCAGGGCTATGAGCCCCCTACCTTCACCGGTTGGTTCAATGCCTGGGACTCGCACAAATGGAGCGGTGGCAGTTCATACgaggaaatgaaaaataaactggGGGATGTTGCATCTATTTCACAGATTACTGTTGATCCGAACAAAACAGATATGAACCTGCAGGACGGGGGTGGCAGGGGATACAGTGCCCCGGGAGGTCCGGTCAGTTCCACACTGCGCGTAGCGGCGCCGGCCTTCAAGACCCAGGCGGAGGTACCTAGTGCCACCTCTCCTGTCAGAGTTACCTCTACTGCCAGAGTCACAATCTCCTCTGGGGGCAGCACGCCTGGCATGGCCCCTGAAATGCTGCTCAACAAAACCCCAGACGAGCTGCCCACAGGAGTGGATCCAGGCAAGAAGGAGGAGTACCTGTCAGATGCAGATTTTGAGACCCTGCTTGGTTCTTCACGGCCAGATTTCTATCGCTTGCCCAAGTGGCGGCAGAATCATCTAAAGAAGGAGGCGGGGGTTTTCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00626	Gelsolin	Gelsolin repeat	Domain	Interproscan
PF02209	VHP	Villin headpiece domain	Domain	Interproscan
PF03031	NIF	NLI interacting factor-like phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003128	Domain	Villin headpiece	Interproscan
IPR004274	Domain	FCP1 homology domain	Interproscan
IPR007122	Family	Villin/Gelsolin	Interproscan
IPR007123	Domain	Gelsolin-like domain	Interproscan
IPR011948	Domain	Dullard phosphatase domain, eukaryotic	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR029006	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR036180	Homologous_superfamily	Gelsolin-like domain superfamily	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR036886	Homologous_superfamily	Villin headpiece domain superfamily	Interproscan
IPR040078	Family	CTD small RNA polymerase II polypeptide A phosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11977	VILLIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0005546	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007010	Biological Process	cytoskeleton organization	Interproscan
GO:0008154	Biological Process	actin polymerization or depolymerization	Interproscan
GO:0008420	Molecular Function	RNA polymerase II CTD heptapeptide repeat phosphatase activity	Interproscan
GO:0015629	Cellular Component	actin cytoskeleton	Interproscan
GO:0016791	Molecular Function	phosphatase activity	Interproscan
GO:0051014	Biological Process	actin filament severing	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0051016	Biological Process	barbed-end actin filament capping	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-