Gene detail

Detailed information of KAJ8416891.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8416891.1	AGAP004664-PA	AAFF_1.1_unplaced_5	8643952	8663882	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00327690

ATGACGGAGTATGACGATCGCAGCAACTACAGTACAGGGCAAGAGAAACGAGACCCAGCTGAAAACATCGACGAGGAATCCTCTTTATCAAACTGTGCGGAGGAGAAGAACAACGGTCCAAgTTCTTCAAAGTCAAGAAAAAAGAGATGCCCCTACACCAAATACCAAATCCGAGAACTTGAACGAGAATTCTTTTTCAATGTCTTTGCACCCAAATCCGCCGTCTTCCCCACGTCTTGGTCCTCGGTTCATCCACAGTCCACAGCTGCCGTGTCAGGGATTTACCATCCCTACGTACACCAGCCCCAGCTTGCAGGCACAGACAACAGATATGTCCGCTCCTGGATAGACCCAATCTCCAACTCTGTTTCTTTTTCCGGCTTCCATCCGAGCAGTCGACACTATGGGACAAAGCCCGAAAGTTTACCGTCAAAAAGGACTGAGTGTGCCGCCTTCGAGGCACAGACTCCGGTCGTCCAGGACTACATTTGTGAAGCAGTGTCAGAAAGCAAGGATAAAGCAACCAAAGATCTGACTGGCAGCGATATTTCGAGCCACGGCGAGCCCAAAGAAGAGAAGCAGCAGCAACTTGACCCAAgcaaCCCGGCTGCAAACTGGATTCATGCACGTTCAACAAGAAAGAAGCGATGTCCTTACACGAAATATCAGACCCTAGAACTGGAAAAAGAGTTTCTTTATAACATGTATCTCACAAGAGATCGACGTTACGAAGTTGCTAGAATTCTTAATTTAACCGAAAGGCAGCTCCCGGGAGAAGAAGAGGTCGGCAGACATATAGCCGATTCCAAACCCTGGAACTCGAGAAAGAATTTCTCTTTAACCCTTATCTAACAAGAAAGCGAAGAATTGAGGTTTCCCATGCGCTGGCTTTGACTGAGAGACAGGTGAAAATCTGGTTCCAAAACAGGAGGATgaagtggaaaaaagaaaacaacaaagacaaatTTCCAACCTCGCGTCCAGACACACAGCTCAAACTGGGAGCAGATCAATTTGAACCAGAGAAAGGTGTGGAAGAGACAGATTAAATAACAACATTAATTGCAGATCCGTCTGAGAAATATATGATTTGAATCAGTTTTAGAATTAAAAAAAGTAGGCTATATTTACTTAACTCATCTCTAAATTGATAAATTGAGATTGTAAAACTAAGTGGGAAGTAAAATATATGTCTCTTTTGAAATCTCTTATTCgaattttggttttgttttacagtaaagaaatgtaataaataaatacacataaaattccaaatgaaaaactattttatatattggtCACGTATAGGCGCTTGAAACGTGCGTTATACATTGAAACATAGTATTTCGAACCAGGAGAAGTAATCATTAATGGAAGGGTATTTATGTGTTTGATTGGTTTAATAATaacgtttgtttttgtacaaaattattaaaatggaatcatgtattttggctggttttAGTACCTATATCGTGCCTTGAtcaagtgtgtgttttttaattctTCAGTAATGTCATATATTTTTTCGGTTGTTTCTTCCCCCCTGCATATATTCGGCGTAGATCCATCCCTTGAGTTCTAAAATGATTAGAAAACTTTAAGGAAAATGTGATAAAGAGTGACTTGtaagtagtttttttaaatgtttttttaaacattgttttgtCTACGCGAATTTTCACACACATTTTGTACTTTATGCTCTGGGCCCGATATTAAACGGGTatacgaaaaaaaaaaatcaaacgtAGTATATGTGGGGCAAAAGTTAACTTGTTTTACTCTACGCTTGCACCTCAACAATTATATAATCTTCCATATTTAATAGTGCAGCTATAGGTACACACAGTGGTCTTATGGTTAAAAATGATGCCCTCCACGGCATGCATTTCATGTAGAAATTGAGCTGTTTCTGTCTTTTGTTCATTTATGCTTTTGCTATATATTTGCCAAGTATCTTTTTCTAAATACAATCAAAGAAAAAGCATACATTTGAATCAATGTATTTGATGCAGTGACATTCAATAATTAAATGTACACAATTAAGTGCTCCTATTTAA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF04617	Hox9_act	Hox9 activation region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR006711	Domain	Hox9, N-terminal activation domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR050803	Family	Abd-B homeobox transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45970	AGAP004664-PA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009952	Biological Process	anterior/posterior pattern specification	Interproscan
GO:0009954	Biological Process	proximal/distal pattern formation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-